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Name : secD (Pput_0865) Accession : YP_001266211.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 986373 - 988235 bp Length : 1863 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGAACAAATATCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAA CCTCTACCCGGATGACCCGGCGGTACAGATCAGCGGTGCCAGCTCGGCGCTGCAGGTGAATCAGGCCGACCTTGATCGCG TCAGCAAGGCGCTGGTCGATGCCAAGATCGCCGTCAAGGGTGCAAGCCTGGGTGAAAAGGGCAGCGGGCTGATCCGCCTG ACCAATCAGGAAGACCAGCTGCCAGCCAAGGATGTAGTGCGCAAGGCACTGGGCGATGATTACGTCGTGGCCCTGAACCT GGCCCAGACTACCCCGCAATGGCTGCGCAACCTGGGCGCAAGCCCGATGAAACTGGGCCTGGACCTGTCCGGTGGTGTGC ACTTCCTGCTGGAAGTGGACATGGACAAGGCCATGACTGCCCGCATGAAAGTCTACGAAGGCGAGGTCAAGACCTTGCTG CGCAAAGAGCGCGTCCGCTACCGCAGCCTGCCTCAGCAGGATGGCGGCATCATGCTGGGCTTCGCTGACGATGCCACCCG CGAACAGGCACGTGCCCTGATCCGCAAGAATTTCAATGATTTCGACCTGACCACCACCGATCGCAACGAGCTTGCGGTGC TGCGTCTGGCGCTGACCCAGGCGAAAGTCGCCGAGATCCGCGAATACTCGATCAAGCAGAACCTCACCACCGTGCGCAAC CGCGTGAACGAGCTGGGTGTGGCAGAGCCTCTGGTACAGCGCCAGGGCGCCAACCGTATCGTGGTCGAGCTGCCAGGCGT GCAGGACACCGCCGAAGCCAAGCGTATCCTTGGTAAAACGGCCAACCTGGAGTTCCGCTTCGGTGCCGAACCGGGTGCAT CCAAGGCCACTACCGAGGTGTTCGAGTTCCGTGAGGGCGGCCGCTCCGCCGCAGTCGAGCGGGGCCTGATCATCACGGGT GACCAGGTTACCGACGCACAGGCCAGCTTCGACGAGCATGGCCGCCCGCAGGTGAACATTCGCCTGGATGGCCACGGTGG CGAGCTGATGAGCCGTGCTACCCGTAGCAACGTCGGCCGTAGCATGGCGGTGATCTTCATCGAGCAGAAGCCGGTTACCC GCTACGTCAAGCAAACCGTCGGCGGCGTCGAGAAGGACGTTGCCGTACAAAGCTTCGTCGAAGAGAAAAAAATCATCAGC CTGGCGACCATCCAGTCGCCGCTTGGCAGCCAGTTCCGCATCACCGGTCTGAACGGCCAGGGCGAATCGTCCGAGCTGGC CCTGCTGCTGCGTGCCGGTGGTCTGGCTGCGCCGATGTACTTCGCTGAAGAACGTACCATTGGCCCAAGCCTGGGTGCTG ACAACATCACCAAGGGTATCGATGCGTCGCTGTGGGGCATGCTGTTCGTCTCGCTGTTCATCATCGCCATCTACCGCGGC TTCGGCGTGATCGCCACCATCGCCCTGGCGGGCAACATGGTCCTGCTGCTGGCGTTGATGTCGCTGCTGGGCGCTACCCT GACGCTGCCGGGTATTGCCGGTATCGTGCTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGCGTATCC GCGAGGAGCTGAAAGCCGGCATGTCGGTGCAGCGTGCCATCCACGAAGGCTTCAATCGTGCGTACACCGCGATCATCGAC GCCAACCTGACCAGCCTGCTGGTCGGCGGTATCCTGTTCGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTTACCAT GTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGCGCAATGGTCAACCTGACCTGCGGCGGGCGTG ACATCAAGAAGCTGTGGGTTTGA Protein sequence : MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDAKIAVKGASLGEKGSGLIRL TNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLL RKERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKVAEIREYSIKQNLTTVRN RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITG DQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVEEKKIIS LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRG FGVIATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIID ANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLWV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 86 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
