Gene Information

Name : Msm_0857 (Msm_0857)
Accession : YP_001273430.1
Strain : Methanobrevibacter smithii ATCC 35061
Genome accession: NC_009515
Putative virulence/resistance : Virulence
Product : peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 814688 - 815392 bp
Length : 705 bp
Strand : -
Note : COG1136

DNA sequence : 
ATGAGTGATATTGTAAAATTTGAAAATGTGGTCAAGGAGTATAAATCCGGAGAGCATATTTTAACAGCTATTGATCATAT
CGATTTTACTATTGAAGAAGGTGAATTTGTTGTTATTTTAGGTCCTTCGGGAGCTGGAAAATCAACTCTTTTAAACCTTT
TAGGAGGTTTAGACACTGTCACCAGTGGTAAAATTATTGTAGATGGAAACAATATTGAAAGCTTCAATGACAATCAGCTG
ACTAAGTACCGAGCTAAAAACGTTGGTTTCATATTTCAATTTTATAACTTAATTCCCAATTTGACTGCTCTTGAAAATGT
TGAACTTATGAAGGATATTGTAGATGTTGATATTGATGGAATGAAAGTTCTGGCATCTGTTGGATTGGACAGGCATGCTA
ATCAGTTTCCTTCACAGTTGTCAGGTGGAGAACAACAAAGAGTTTCAATAGCTAGGGCTGTTGCTAAAAAACCGTCTATG
CTTTTATGTGATGAACCTACTGGAGCACTGGATTCTAAAACAGGTGTTTCAATTTTGAATTTACTTCAGAATATGAGTGT
TAACAACAATTCCACTGTAGTTATTGTTACACATAATGCAATTCTTGCTGAAGCTGCAGACAAGGTTATAAGAATTAAAA
ATGGTAAAATTGAAAGCATAACAATTAATGAAAACCCTAAAAAAGTAACTGATTTGGAATGGTGA

Protein sequence : 
MSDIVKFENVVKEYKSGEHILTAIDHIDFTIEEGEFVVILGPSGAGKSTLLNLLGGLDTVTSGKIIVDGNNIESFNDNQL
TKYRAKNVGFIFQFYNLIPNLTALENVELMKDIVDVDIDGMKVLASVGLDRHANQFPSQLSGGEQQRVSIARAVAKKPSM
LLCDEPTGALDSKTGVSILNLLQNMSVNNNSTVVIVTHNAILAEAADKVIRIKNGKIESITINENPKKVTDLEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msm_0857 YP_001273430.1 peptide ABC transporter ATPase NC_012469.1.7685735. Protein 7e-52 55
Msm_0857 YP_001273430.1 peptide ABC transporter ATPase NC_012469.1.7686878. Protein 5e-37 44
Msm_0857 YP_001273430.1 peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-36 43
Msm_0857 YP_001273430.1 peptide ABC transporter ATPase CP001581.1.gene798.p Protein 3e-36 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Msm_0857 YP_001273430.1 peptide ABC transporter ATPase VFG0869 Protein 2e-16 41