Gene Information

Name : rpoB (FP1176)
Accession : YP_001296074.1
Strain : Flavobacterium psychrophilum JIP02/86
Genome accession: NC_009613
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase beta subunit RpoB
Function : -
COG functional category : K : Transcription
COG ID : COG0085
EC number : 2.7.7.6
Position : 2289211 - 2293023 bp
Length : 3813 bp
Strand : -
Note : -

DNA sequence : 
ATGATAACAAATCAGACTGAAAGATTGAATTTTGCCTCAACAAAAAATATTCCTGCTTATCCAGATTTTCTAGATGTTCA
GGTTAAATCTTTTCAAGATTTCTTTCAATTAGAAACGAAATCTGACGAAAGAGGCAACGAAGGGCTTTACAATACCTTCA
TGGAAAACTTTCCAATTACAGATACTAGAAATAACTTTGTATTGGAGTTTATTGATTACTTTGTAGACCCACCTCGTTAT
ACAATTCAAGAATGTATAGAGAGAGGTCTTACTTATAGTGTGCCACTAAAAGCACGTTTAAAACTATATTGTACAGACCC
AGAACATGAAGATTTTGAAACTATAGTACAAGATGTATATCTTGGAACTATTCCTTACATGACACCTAGCGGAACTTTCG
TTATTAACGGTGCTGAGCGTGTGGTTGTTTCTCAATTACATAGATCACCAGGTGTTTTCTTTGGACAATCATTCCATGCA
AATGGAACCAAATTATATTCTGCGCGTGTTATTCCTTTTAAAGGATCATGGATAGAATTTGCTACCGATATCAATAGTGT
AATGTATGCTTATATCGATAGAAAGAAAAAATTACCTGTTACTACTTTATTCCGTGCTATCGGTTTTCAAAGTGATAAAG
ATATCCTTGAAATTTTTGACCTTGCTGAAGAAATTAAAGTTTCTAAATCAGGACTTAAAAAATATATTGGAAGAAAACTT
GCTGCTCGTGTATTAAACACTTGGCACGAAGATTTCGTCGATGAAGATACTGGTGAAGTAGTTTCTATCGAAAGAAATGA
AATCATCTTAGATCGTGATACGATTTTAGATAAAGATAATGTAGAAGAAATTGTAGAATCTAACGTGAAATCTATCTTGT
TGCACAAGGAAGATAATAACGTTGTAGATTATTCAATCATTCATAATACATTACAAAAAGATCCAACCAACTCTGAAAAA
GAAGCCGTTGAGCACATCTACAGACAATTGCGTAATGCAGAACCGCCTGATGAAGAAACTGCTCGTGGTATTATAGATAA
ATTATTCTTCTCTGACCAACGTTACAATTTAGGTGAAGTAGGTCGTTATAGAATAAACAAAAAATTAGGTTTAGATACTC
CAATGGAAAAGCAAGTGCTTACCAAAGAAGATATCATTACCATCGTGAAATATTTGATCGAGTTAATCAATGCGAAAGCA
GATATTGATGATATCGATCACTTATCAAACCGTCGTGTAAGAACTGTAGGTGAGCAATTATCTCAGCAATTTGGCGTTGG
TTTGGCTCGTATGGCTAGAACTATTCGTGAGAGAATGAACGTTAGAGATAACGAGGTGTTTACACCTATCGATTTGATTA
ATGCTAAAACATTATCATCGGTAATCAACTCTTTCTTTGGTACAAACCAGTTGTCTCAATTTATGGATCAAACCAATCCA
TTAGCCGAGATTACACACAAGCGTCGTTTATCTGCCCTAGGACCAGGTGGTCTTTCTCGTGAAAGAGCTGGTTTTGAGGT
ACGTGACGTTCACTACACGCACTACGGAAGACTTTGCCCAATTGAAACTCCTGAGGGACCAAACATTGGATTAATTTCAT
CTTTGGGTGTTTACGCAAAAGTAAACGGAATGGGTTTTATCGAAACGCCGTATCGTAAAGTAACAAATGGTGTTGTTGAT
TTAACTTCTGTCCCTAAATATTTAAGTGCCGAAGAAGAAGAAGGAATGTTAATTGCACAAGCAAACATTCAAATGGATGA
AAATGGTAAAATTACTGCCGATAACGTTATTGCTCGTCAAGAAGGTGATTTTCCAGTAATAGACCCAACTGCTGTTCATT
ATACCGATGTTGCGCCTAATCAAATTGCATCTATCTCAGCTTCATTAATTCCTTTCTTGGAACATGATGATGCGAATAGA
GCCTTGATGGGATCTAACATGATGCGTCAAGCTGTTCCTCTTATTCGCCCTGAAGCACCAATTGTTGGTACAGGTTTAGA
GCGTCAAGTAGCCTCAGATTCTAGAGTATTAATAAATGCTGAAGGAGCTGGAGTTGTAGAATATGTTGATGCAGATATGA
TTACCATCAAATACGATAGAACGGATGCCGAAAGAGCAGTAAGTTTCGAATCTGATGAGAAGACATATAAATTAATTAAA
TTTAGAAAAACGAATCAAGGAACTTCTATCAACTTAAAACCTATCGTAAGAAAAGGGGATAAAGTAATAAAAGGACAAGT
GCTTTGTGAAGGATATGCAACACAAAACGGAGAGTTAGCTTTAGGTCGTAACCTAAAAGTAGCCTTTATGCCTTGGAAAG
GGTATAACTTCGAGGATGCGATTGTAATTTCTGAAAAAGTAGTTCGTGATGATATTTTTACCTCAATCCACGTAGATGAT
TATTCATTAGAAGTTAGAGATACAAAATTAGGTAACGAAGAGTTAACTAATGATATTCCTAATGTTTCTGAAGAAGCTAC
CAAAGATTTAGATGAAAACGGAATGATTAGAATTGGTGCCGAAGTTAAACCTGGCGATATTCTAATAGGAAAAATTACAC
CAAAAGGAGAATCAGATCCAACTCCAGAAGAGAAATTGCTTCGTGCCATCTTCGGGGATAAAGCTGGTGATGTAAAAGAT
GCTTCATTAAAAGCTTCTCCATCACTTCATGGTGTTGTTTTAGATAAAAAACTATTCGCAAGAGCAGTAAAAGACAAACG
TAAACGTACACAAGATAAAGACGCATTGTCTGATCTGGAAATGGAATTTGAAGTTAAATTTGTTGAATTAAAAGACAAAT
TAGTAGACAAATTATTTACCATAGTAAACGGAAAAACATCGCAAGGTGTGATGAATGATTTGGGTGAAGAAGTTTTACCA
AAAGGTAAAAAATATACTCAAAAAATGTTATATGCAGTTGAAGATTTTGCTCACTTAACAAGAGGACAATGGGTTGCTGA
CGATGAAACCAATAAAATGGTGAACGACTTAATTCATAACTACAAAATTAAGTTAAACGACCTTCAAGGCGCATTAAGAA
GAGAGAAATTTACCATTACAGTTGGAGATGAATTGCCAGCAGGAATCTTGAAATTAGCCAAAGTTTATATCGCCAAAAAA
CGTAAGTTAAAAGTAGGTGATAAAATGGCGGGTCGTCACGGAAATAAAGGAATCGTTGCACGTATTGTGCGTCACGAAGA
CATGCCTTTCCTTGAAGACGGAACACCAGTAGATATTGTATTGAATCCACTTGGAGTGCCTTCTCGTATGAACATTGGTC
AGATTTACGAAACCGTTCTAGGATGGGCAGGACAAAACTTGGGACGCAAATATGCAACACCAATTTTCGACGGAGCATCA
TTAGATCAAATAAACGCAATTACTGACGAAGCTGGGGTACCACGTTTCGGACACACACATCTTTATGATGGTGGTACAGG
AGAGCGTTTCCACCAAGCCGCAACAGTTGGAGTTATCTATATGTTGAAACTTGGACACATGGTTGATGACAAAATGCACG
CACGTTCTATCGGACCATACTCACTTATTACACAACAACCATTGGGTGGAAAAGCTCAATTTGGAGGGCAGCGTTTTGGA
GAGATGGAGGTTTGGGCACTTGAAGCTTATGGAGCATCAAGTACACTACGTGAAATTTTGACAGTAAAATCTGATGATGT
TATTGGTAGAGCAAAAACTTACGAAGCAATCGTGAAGGGAGAAACTATGCCAGAACCAGGATTACCTGAATCGTTCAATG
TATTAATGCATGAACTAAAAGGTCTTGGATTAGATATTCGTTTAGAAGAATAA

Protein sequence : 
MITNQTERLNFASTKNIPAYPDFLDVQVKSFQDFFQLETKSDERGNEGLYNTFMENFPITDTRNNFVLEFIDYFVDPPRY
TIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHA
NGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFQSDKDILEIFDLAEEIKVSKSGLKKYIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNVEEIVESNVKSILLHKEDNNVVDYSIIHNTLQKDPTNSEK
EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRINKKLGLDTPMEKQVLTKEDIITIVKYLIELINAKA
DIDDIDHLSNRRVRTVGEQLSQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTNGVVD
LTSVPKYLSAEEEEGMLIAQANIQMDENGKITADNVIARQEGDFPVIDPTAVHYTDVAPNQIASISASLIPFLEHDDANR
ALMGSNMMRQAVPLIRPEAPIVGTGLERQVASDSRVLINAEGAGVVEYVDADMITIKYDRTDAERAVSFESDEKTYKLIK
FRKTNQGTSINLKPIVRKGDKVIKGQVLCEGYATQNGELALGRNLKVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHVDD
YSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD
ASLKASPSLHGVVLDKKLFARAVKDKRKRTQDKDALSDLEMEFEVKFVELKDKLVDKLFTIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLYAVEDFAHLTRGQWVADDETNKMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPAGILKLAKVYIAKK
RKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGQNLGRKYATPIFDGAS
LDQINAITDEAGVPRFGHTHLYDGGTGERFHQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 45
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP002695.1.gene18.p0 Protein 0.0 46
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_009085.4918494.p0 Protein 0.0 46
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP000675.2.gene392.p Protein 0.0 46
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP000034.1.gene3741. Protein 0.0 46
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002695.1.914942.p Protein 0.0 46
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002516.2.881699.p Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_010400.5987325.p0 Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_010611.6233925.p0 Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_011595.7060572.p0 Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_010410.6003841.p0 Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_011586.7046027.p0 Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_008702.1.4609796. Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP004022.1.gene2794. Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP001918.1.gene250.p Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP001138.1.gene4362. Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB CP000647.1.gene4402. Protein 0.0 45
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_011035.1.6448762. Protein 0.0 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_009782.5559150.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002758.1120515.p0 Protein 1e-177 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002953.2862188.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002952.2860169.p0 Protein 2e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_007793.3914836.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_003923.1002608.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_013450.8613267.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_009641.5330265.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_009487.5169226.p0 Protein 3e-177 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_010079.5776819.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002951.3236234.p0 Protein 2e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_007622.3792928.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_002745.1123305.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_007795.3920377.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_009632.5315067.p0 Protein 1e-178 43
rpoB YP_001296074.1 DNA-directed RNA polymerase beta subunit RpoB NC_012469.1.7686402. Protein 7e-171 42