|
Name : lysS (Cbei_0105) Accession : YP_001307251.1 Strain : Clostridium beijerinckii NCIMB 8052 Genome accession: NC_009617 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 134890 - 136395 bp Length : 1506 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAACAGAAGAAATGAGCATGCAAGAGTTAGAGTCTCAGTATAATGAACAGGAAGGATTGAGAAGAGCTAAACTAGC AGAGCTACAAGGTGCTGGAAAGGATCCTTTTGATGTTTATAAAGTCAACAGAACTCATACATCAGAGGAAGTTAAGGCAA ATTATGATGCACTAGAAGGTAAGGAAGTAACCGTTGCAGGAAGACTAATGTCTAAAAGAGGGCAGGGAAAAGTTGTTTTC TCAGATATACATGATAAGGATGGTAAGATACAACTATTCTTAAAGATTGATAAGGTTGGGGAAGAAAATTTAAAGCAATA TAAAACTTTTGATTTAGGTGATTGGATTGCAGCAACTGGAGAAGTATTTACAACTAAAACAGGTGAAGTATCAGTAAATG TAAATACTTTTGAGTTGACTTGTAAATCTTTAAAGCCACTTCCAGAAAAATGGCATGGGTTAAAAGATCCAGATTTAAGA TATAGACAAAGAGAAGTTGATATAATTACAAATACAGAAGTTAAGGATACTTTTATTAAAAGAAGTAAAATCATTTCAGC TATAAGAGAATTCCTAGATGCTAAAAGCTTTATAGAAGTAGAAACTCCAATTCTTGGAGCAATAGCTGGTGGAGCAGCAG CAAAACCTTTCATTACTCATCACAATACTTTAGATATGGATATGTATTTAAGAATAGCTACAGAGTTATATCTTAAGAGA TTAATAGTTGCTGGTTTTGAAAAGGTATATGAAATAGGAAGAAATTTTAGAAATGAAGGTATGTCAGTAAGACATAATCC TGAATTTACAGCTATAGAATTATACGAAGCATATTCTGATTATAATGACATGATGGAAATTACAGAAAATATGGTTGCAT ATATTTGTGAAAAAGTAAATGGAACTACTAAGGTTGCTTATCAAGGTACAGAAATAGACTTTAAGCCACCATGGAGAAGA ATCACTATGGTTGATGCTGTAAAAGAATATGCTGGGGTAGATTTCAATGAAATAAAATCTGACGATGAAGCTCAAACTAT AGCAAAGGAAAAACACTTAGAATTTGCTAAACCATTAAATACAGTAACAAAAGGTGAAGTTTTAAATGCTTTATATGAAG AGTTTGGTGAAGCAAATATGATTCAACCTACATTTGTTACGGATTATCCAGTTGAAATTTCACCTCTTACAAAGAAAAAG AGAGGAAATCCTGAATTTACTGAAAGATTTGAAGGCTTTGTATTTGGTAGAGAACTTTGTAATGCATACTCAGAATTAAA CGATCCTATAGTTCAAAGACAAAGATTCGAACAACAAGCTAAAGAGAGAGAACTTGGAGATGACGAGGCATATATGCTAG ATGAACAATTTATGAGTGCTCTTGAAACAGGTATGCCACCAACAGGTGGAATGGGAATGGGAATAGATAGACTTATAATG TTCTTAACTGATTCAGCTTCAATCAGAGATGTTATATTATTCCCAACAATGAGACCACAGAAATAA Protein sequence : MSTEEMSMQELESQYNEQEGLRRAKLAELQGAGKDPFDVYKVNRTHTSEEVKANYDALEGKEVTVAGRLMSKRGQGKVVF SDIHDKDGKIQLFLKIDKVGEENLKQYKTFDLGDWIAATGEVFTTKTGEVSVNVNTFELTCKSLKPLPEKWHGLKDPDLR YRQREVDIITNTEVKDTFIKRSKIISAIREFLDAKSFIEVETPILGAIAGGAAAKPFITHHNTLDMDMYLRIATELYLKR LIVAGFEKVYEIGRNFRNEGMSVRHNPEFTAIELYEAYSDYNDMMEITENMVAYICEKVNGTTKVAYQGTEIDFKPPWRR ITMVDAVKEYAGVDFNEIKSDDEAQTIAKEKHLEFAKPLNTVTKGEVLNALYEEFGEANMIQPTFVTDYPVEISPLTKKK RGNPEFTERFEGFVFGRELCNAYSELNDPIVQRQRFEQQAKERELGDDEAYMLDEQFMSALETGMPPTGGMGMGIDRLIM FLTDSASIRDVILFPTMRPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-93 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001307251.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-93 | 46 |
