Gene Information

Name : Amet_3554 (Amet_3554)
Accession : YP_001321337.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3647219 - 3647974 bp
Length : 756 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:pE88_25 ABC transporter ATP-binding protein

DNA sequence : 
ATGAATGTTTTAGAAGTAAAGAATCTGTCGAAAATTTATTTGGGAAAAATAAATTATACAGGATTAGAAAATATTGATTT
TAATTTAAAAGAAGGTGAATTTGTAGGAGTGATGGGACCTTCTGGCAGCGGAAAAACCACTTTATTAAATTGCGTTTCTA
CAATAGATGAACCCTCAACTGGTGAAGTTTTAGTAAATGGCAAAAATCCATATAAATTAAAAGAAGAAGAGTTATCTAAA
TTTCGCAGAAAGGAATTAGGTTTTGTTTTTCAGGATTTTAATTTAGTACACACTTTAACAGTAAAAGAAAATATCATACT
ACCATTAGTACTAGATAGTATAGATTTAAAAGTTATGGAAGAGAGGCTTAACAAAATCATAAACCTTTTAGGAATCGAAA
AGATATTAAATAAAAGGACTTTTGAAATTTCAGGAGGGCAAGCCCAGAGAGTTGCTTTAGCAAGGGCATTAATTCATAAT
CCACCTTTACTATTAGCTGATGAACCTACTGGTAATTTAGATACTAAAGCTGCAAAAGATGTAATGAAAATATTTACTAC
CATTAATGAAGAACTTACTACATCTATTTTAATGGTTACTCATAATCCATATATAGCAAGCTTTTGCAGTAGAGTTATTT
TTATAAAAGATGGAAATCTTTATAATGAGATTCATAGGGGAGATAATAAAACTGTATTTTATAAGAAAATAATAGATATG
TTGAGTTTCTTAGGAGGTGATGTAGATGACATTTAA

Protein sequence : 
MNVLEVKNLSKIYLGKINYTGLENIDFNLKEGEFVGVMGPSGSGKTTLLNCVSTIDEPSTGEVLVNGKNPYKLKEEELSK
FRRKELGFVFQDFNLVHTLTVKENIILPLVLDSIDLKVMEERLNKIINLLGIEKILNKRTFEISGGQAQRVALARALIHN
PPLLLADEPTGNLDTKAAKDVMKIFTTINEELTTSILMVTHNPYIASFCSRVIFIKDGNLYNEIHRGDNKTVFYKKIIDM
LSFLGGDVDDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_3554 YP_001321337.1 ABC transporter-like protein CP001581.1.gene598.p Protein 5e-41 45
Amet_3554 YP_001321337.1 ABC transporter-like protein NC_012469.1.7686878. Protein 9e-36 45
Amet_3554 YP_001321337.1 ABC transporter-like protein CP001581.1.gene798.p Protein 4e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_3554 YP_001321337.1 ABC transporter-like protein VFG0869 Protein 3e-22 41