Gene Information

Name : Amet_3835 (Amet_3835)
Accession : YP_001321611.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : glycyl-radical activating family protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG1180
EC number : 1.97.1.4
Position : 3948749 - 3949696 bp
Length : 948 bp
Strand : -
Note : TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ctc:CTC01448 benzylsuccinate synthase activating enzyme

DNA sequence : 
ATGAGCTATTGTACAAAAAATACAATAAAAGATACAGGAAGGATATTCAACATCCAAAAGTATAATACCTATGATGGGCC
AGGGGTTAGAACTCTAGTGTTTTTCAAAGGGTGCCCATTAAGATGTAAATGGTGCTCAAATCCAGAGGGGTTGGAAAAGG
ACTTCGAAGTTCTTTTTGATGAAAAGATATGCAGTAGGTGTCAAACTTGTGTTGCAGTATGTCCTGTTGGGATTCATAGT
GCTCAAGGGGGAAAACACTTAATTGATCGCAGCAAAACCTGCATTGGGTGCCGGAAATGTGAAGAAGAATGTCAAAAGAA
CGCAATATCCATTATGGGGGAAGACAAAACTGTAGAGGAACTTCTTGAGATTATTGAAGAAGATTCACCCTTTTATGATT
TATCAGGGGGAGGGGTGACTCTAGGTGGAGGCGAAGTCTTGATGCAATCTGATTTTGCAGGGCAGCTCTTAAAAGCATGT
AAGAAGGAATGGATTCATACAGCTATTGAGACAAGTGGTTATGTGAATTCTGAAAATCTATTGAAATTAGCGGAAAATGT
AGATTTATTTCTTTATGATCTAAAGCATATTAACTCTGAAAAGCATTATCAGTGGACAGGTGTGTATAATGATAGAATTT
TCGATAATTTAAAAGAGCTTCTCAACAGGAAGTATAATGTTAAAATTAGAATGCCTCTTTTAAAAGGGGTGAATGATCGA
AAGGAAGACATTGATAAGCTGATGAGATTTATTGAGCCCTATAAAAATTATGAAAACTTTAAAGGAATTGATTTATTACC
TTATCATAAACTCGGAGTAAACAAATATAGATTATTAGATAAAACCTACCCCATTGAGGGAGATCCTAGTTTAAATAAAG
AGGATTTAAAGAAGATCGAGAGTTGGATAGAAAAATACGATTTACCCGTTACGGTAATTCTTCATTAA

Protein sequence : 
MSYCTKNTIKDTGRIFNIQKYNTYDGPGVRTLVFFKGCPLRCKWCSNPEGLEKDFEVLFDEKICSRCQTCVAVCPVGIHS
AQGGKHLIDRSKTCIGCRKCEEECQKNAISIMGEDKTVEELLEIIEEDSPFYDLSGGGVTLGGGEVLMQSDFAGQLLKAC
KKEWIHTAIETSGYVNSENLLKLAENVDLFLYDLKHINSEKHYQWTGVYNDRIFDNLKELLNRKYNVKIRMPLLKGVNDR
KEDIDKLMRFIEPYKNYENFKGIDLLPYHKLGVNKYRLLDKTYPIEGDPSLNKEDLKKIESWIEKYDLPVTVILH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42072.1 hypothetical protein Not tested PAI II 536 Protein 8e-64 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_3835 YP_001321611.1 glycyl-radical activating family protein VFG1591 Protein 4e-64 49