Gene Information

Name : Amet_3838 (Amet_3838)
Accession : YP_001321614.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 3952726 - 3953025 bp
Length : 300 bp
Strand : -
Note : PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like

DNA sequence : 
ATGAGGTATCACGGTGAGGAAGCACTAGGTCTTATAGAAACAATTGGAATGGTTCCTGCAGTAGAAGCAGCAGATAAGAT
GTTGAAGGCTTCGAATGTAGAAATTGTAGCCTATGAAAATATCGGTTCAACATTAGTTACAGTGATGATCAAAGGGGATG
TAGCAGCAGTAAAAGCTGCAGTAGAAGCTGGGGCGACTGCTGCTTCTACTATAGGGAAGTTAACAGCGCAACATGTTATG
CCTAGACCCATAGAAAATATAGGTCACATTGTTTCTATTTATGACATTGATAATAAATAA

Protein sequence : 
MRYHGEEALGLIETIGMVPAVEAADKMLKASNVEIVAYENIGSTLVTVMIKGDVAAVKAAVEAGATAASTIGKLTAQHVM
PRPIENIGHIVSIYDIDNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 9e-13 57
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 2e-13 56
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 7e-12 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_3838 YP_001321614.1 microcompartments protein VFG1596 Protein 4e-13 57
Amet_3838 YP_001321614.1 microcompartments protein VFG1597 Protein 7e-14 56
Amet_3838 YP_001321614.1 microcompartments protein VFG1598 Protein 3e-12 56