Gene Information

Name : Amet_4512 (Amet_4512)
Accession : YP_001322243.1
Strain : Alkaliphilus metalliredigens QYMF
Genome accession: NC_009633
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4611745 - 4614183 bp
Length : 2439 bp
Strand : -
Note : PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-b

DNA sequence :
ATGGCTATGTTTGGTAAATTTACGGAAAGAGCACAAAAAGTAATTGTATTATCGCAGCAGGCAGCTCAAGCATTAGGACA
TAATTATGTAGGAACCGAGCACTTGCTTTTAGGACTGATAGATGAAGGGGAAGGTGTTGCCTTTCAGGCATTGAAAAATT
TGGGGGTAGCAAGCGATCAGTTAAAGAAAAAAGTTGTTTCCTATGTGGGAACCGGAGAAAATAGTGGAGAACTGTTAGGA
TTTACACCAAGAACAAAACGTGTTTTTGAATTGAGTTTTGCTGAAACCCGAAGCTTAAATCAAAGCTATATTGGAACCGA
ACACTTATTATTAGGTTTGATTCGAGAGGGAGAAGGGATAGCGGCAAAAGTATTGATTGAATTAGGAGTTGATCTAAAAA
AAGCCCGAGAGGAAGTCATAAAAATTATTAATAGTGCTGGAAGTCACCCGAACACGGCTAAACCAAAGACTAGTCCCAAG
GGAAATACACCAGCACTGGATCAATATGGCAGAGACTTAAACGAAATGAGCCGTGAAGGAAAATTAGACCCAATCATCGG
AAGAAGAATAGAAATTGACAGAGTGATTCAAGTATTAAGTCGTAGAACAAAAAACAATCCGTGTCTCATTGGGGAGCCAG
GGGTAGGAAAAACAGCTATTGCAGAGGGATTGGCACAGAAAATTGAAGAAGGCAATGTACCTGAAATGCTAACGGGGAAA
AGAGTGGTTAACTTAGATGTGGCTTCGATGATTGCGGGGACTAAATACCGAGGAGAATTCGAAGAACGAATGAAAAAAAT
CATGACAGAATTAAGGGATTCAACTGATGTCATCCTCTTTATTGACGAAATTCATACCATTATAGGAGCAGGTGCAGCGG
AAGGTGCCATGGATGCTGCTAATATATTGAAACCAGCCTTAGCAAGAGGAGAATTGCAAGTGATTGGAGCCACTACATTA
GATGAATTTAGAAAGCACTTTGAAAAGGATGCAGCTTTAGAGAGGAGATTTCAACCGATTACTGTAGAAGAGCCTACGGT
CGAAGATACAATCAAAATTTTAGCGGGACTAAGGGACCGCTATGAAGCTCATCACAGAGTTAAGATTACAGATGAAGCAT
TAGAAGCTGCAGCGGAACTGTCGGATAGATATATTATGGATCGTTATTTACCTGATAAAGCCATTGATTTAATTGATGAA
GCTGCTTCTAAGATTAGAATTGAAACTGTCACAGCACCACCTAATTTGAGGACCCTAGAAGATAACATTGAAAAATTAGC
CAAAGAGAAGGAAGAAGCAATTAGCATACAGGACTTTGAAAGGGCGGCAAAAATTAGAGATGAAGAAAAGAAATCCAGGG
AAGATCTAGATTCAGCTCAAAGAAAATGGAAAAGTTCTAAGGAAAACCGCAATGGAATTGTTGGAGCAGAGGAAATTGCG
CAAATTGTTTCAAGCTGGACCGGCGTTCCTGTAATGAAGTTACAGGAAGAGGAATCTCAAAGACTGTTGAAACTAGAGGA
AGCATTACACCACCGAGTCATTGGACAGGAGCCTGCTGTCAAATCCATATCCCAGGCCATACGAAGGGCTAGAGTTGGAT
TAAAGGATCCCAAGAGGCCAATCGGTTCCTTTATTTTCTTAGGACCTACAGGAGTGGGAAAAACAGAGCTTTCAAGGGCA
TTAGCAGAAGTGATGTTTGGCGATGAAGATGCAATGATACGCATTGACATGTCTGAATATATGGAAAAACATACGGTTTC
TCGATTAATAGGTTCGCCACCAGGATATGTTGGGTTTAATGAAGGTGGGCAATTAACAGAGAAAGTACGTAGAAAGCCTT
ATTCTGTTGTGCTGTTTGATGAAATAGAAAAGGCTCACCCTGATGTTTTTAATGTATTACTTCAAATTCTAGATGATGGT
CGCTTGACTGATGCCCAGGGAAGAATGATAAACTTTAAAAACACAGTCATCATCATGACCTCCAATGTAGGTGCACACAC
CATAAAGAAACAGAGGATATTAGGTTTCTCTGCAACGGTTGAAGACCAGGCGAAAAATGAGTATGAAAAGATGAAAGAGA
ATGTAATGGATGAATTAAGGAAAACATTTAGACCGGAATTCTTAAATAGAATTGATGATAGCATTGTATTCCATGGCCTA
GAGCGGGAGCATATCCATCAAATCGTGGATCTCATGATAGGGGATTTAAAAAAGAGATTAAAGGCATTGAATATCAATAT
TGAAGTGACTGAAGCCACTAAGAATCATATTGTTGATCAGGGATTTGATCCTCAATATGGAGCGCGACCACTGAAAAGAG
CGATTCAAAAAATTGTAGAAGATCCGCTGTCAGAAGAATTGCTACAGGGAACGATTCGAAATGGCCAAACCGTCAATGTA
GATTATCAAGGAGAAAAACTATTGATAAACGCTTTGTAG

Protein sequence :
MAMFGKFTERAQKVIVLSQQAAQALGHNYVGTEHLLLGLIDEGEGVAFQALKNLGVASDQLKKKVVSYVGTGENSGELLG
FTPRTKRVFELSFAETRSLNQSYIGTEHLLLGLIREGEGIAAKVLIELGVDLKKAREEVIKIINSAGSHPNTAKPKTSPK
GNTPALDQYGRDLNEMSREGKLDPIIGRRIEIDRVIQVLSRRTKNNPCLIGEPGVGKTAIAEGLAQKIEEGNVPEMLTGK
RVVNLDVASMIAGTKYRGEFEERMKKIMTELRDSTDVILFIDEIHTIIGAGAAEGAMDAANILKPALARGELQVIGATTL
DEFRKHFEKDAALERRFQPITVEEPTVEDTIKILAGLRDRYEAHHRVKITDEALEAAAELSDRYIMDRYLPDKAIDLIDE
AASKIRIETVTAPPNLRTLEDNIEKLAKEKEEAISIQDFERAAKIRDEEKKSREDLDSAQRKWKSSKENRNGIVGAEEIA
QIVSSWTGVPVMKLQEEESQRLLKLEEALHHRVIGQEPAVKSISQAIRRARVGLKDPKRPIGSFIFLGPTGVGKTELSRA
LAEVMFGDEDAMIRIDMSEYMEKHTVSRLIGSPPGYVGFNEGGQLTEKVRRKPYSVVLFDEIEKAHPDVFNVLLQILDDG
RLTDAQGRMINFKNTVIIMTSNVGAHTIKKQRILGFSATVEDQAKNEYEKMKENVMDELRKTFRPEFLNRIDDSIVFHGL
EREHIHQIVDLMIGDLKKRLKALNINIEVTEATKNHIVDQGFDPQYGARPLKRAIQKIVEDPLSEELLQGTIRNGQTVNV
DYQGEKLLINAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 57
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-89 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amet_4512 YP_001322243.1 ATPase VFG0079 Protein 0.0 61
Amet_4512 YP_001322243.1 ATPase VFG0080 Protein 8e-158 53