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Name : Smed_0884 (Smed_0884) Accession : YP_001326574.1 Strain : Sinorhizobium medicae WSM419 Genome accession: NC_009636 Putative virulence/resistance : Virulence Product : type I secretion system ATPase Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 947312 - 949492 bp Length : 2181 bp Strand : - Note : TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: xft:PD1412 toxin secretion ABC transporter ATP-binding protein DNA sequence : ATGCATAGAGTAGCGACATCATCACCCGGCGAAGTACCTGCAGAACGCATCGGAGAAAGGCAGCCGGACAGCGGCCTGTC GGCGCTTTCCGCCATCGCCGGCTATTACCGCCTGCCGGCGAATGCCGGGGCAATTGCCCGTCAACTGGCCATCACCGGCC CCGCCGGTACCGACGACCTCCTGAGAGCCGCACGCCTGATCGGCCTCAAAGCCCGGTCGATTGCCGCGACGGCCGGCCGT ATCGCTACGATGCCGGTGCCGGCAATCGCCTGCCTCACGGATAGTTCCTTCGCCGTCTTCGGCGGCAAATCCGGCGAAGG GAGCTTTCGGCTCGTCAATCCGGTCGATTTTTCCAGCCGCGATGTCGATACCGCCGAACTGCTGCGGCTCACGGGCGGAC GGTTCATCCTGATTCAGCGGCGCTTCGGCGGACCGGGCGCTGATCCGGCAGCATTCGGTTTTCGCTGGTTCCTGCCGTCG ATCTGGCGCTACCGCCGCGCCTTCGGACATGTGTTGATCGCATCGCTGTTCGTCCAGCTCTTCGCACTGATCACGCCGCT TTTCTTCCAGGTCGTCGTCGACAAGGTGCTGGCGCATCGCAGCTATTCGACGCTGATCGTGCTCGTCGTCGGGCTTGCCG TCGTCGGCCTCTTCGATGTCGTGCTCCAATATCTGCGCACCTATGCATTGTCGCACACCACCAACCGCATCGATGTCGAG TTGGGGCGCCGGCTGTTCCGGCATCTTCTCAGCCTGCCGCTCGACTATTTCGAGACGCGACCCACCGGCCAGACCGTCGC CCGCATCCGCGAACTCGAAACCATCCGTGCCTTCCTCACTGGCCAAGGGCTCTTTTCCGGCCTCGATCTGATCTTCACCT TCGTCTTCATCTTCGTGCTCTTCAGCTATTCCAAGACGCTTGCCTGGATCGTCGTCGCCTCGATCCCCTTCTATCTCGCC ATCGGTTTTCTCGTTCGTCCGTTCCTGAAGGAGCGCATCGACGAGAAGTTCGAACGCGGAGCCTGGAGCCAGCAGTTGTT GGTAGAAACGGTGGTCGGCGTGCAGACGTTGAAGGCAGCGGCGGTCGAGCCCGTCGTATCCGCCGATTGGGAGGAGCGGC TCGCAGCCTATGTGAAATCGTCCTTTCTCGCGACGATGCTTGCCGCAAAGGGCCAGAATGCCGTTCAATACATCAACAAG GTGACCAGCGCCGCCCTGCTGCTTTTCGGCGCACAGGCGGTGATCGACGGCCATTTGACGGTCGGGGCGCTCGTCGCCTT CAACATGATCGCGGGCCAGGTCTCGCAGCCTATCCTTCGTCTTTCACAGCTTTGGCAGGATTTTCAGCAGGTCCAGGTCT CCGTTTCGCGCCTCGCCGACATCCTCAATGCGCCGGCGGAGCCACGCCCCGCCGCGACCATCAGCCTCCCGCCCCCACGC GGCGCCATCGCCTTCAAATCGGTCGGCTTTCGCTACGCGCACAATGCTCCGGACGTGTTGAAAAATGTGACGCTCGCGGT TCGCCCCGGCGAGGTGCTTGGCATCGTTGGACCTTCAGGATCGGGGAAATCGACGCTGACGAAGCTCGTACAGCGCTTCT ACATTCCGCAAACCGGTCAGGTCTTCGTCGATGGCCACGATATCGCCCAGGTCGACCCGGCCTGGCTGCGCGCCGGAATC GGCGTCGTGCTCCAGGAGAACATGCTCTTCAACCGCTCGATCCACGACAATATCGCACTGGCCAATCCGGCGATGTCGCG CGCGGCGGTGATGCGGGTCGCGCGCCTTTCCGGCGCGGACGAATTCATCGCGAAACTTCCGCGCGGTTACGACACGCAGA TCGAGGAGCGCGGTGCCAATCTCTCCGGCGGTCAGCGGCAGCGGCTGGCGATCGCTCGCGCGCTCGCCACGAATCCCCCG ATCCTTATTCTCGACGAGGCCACGAGTGCCCTCGATTACGAGAGCGAGCGTATCGTTCTCGCCAATATGCGCGAGATCGT GAAGGGCCGCACCGTGATCATCATCGCCCATCGCCTCGCGACCGTGCGCCACTGCGATCGGATCATCGGCATGAAGGACG GCCGCATCATCGAGGAAGGCTCCCATGAGGTCCTGGTCGCCCGACCGAACGGGCTCTATTCGCATCTCTGGCAGCTCCAG ACAGGGGCCGCACAGGCATGA Protein sequence : MHRVATSSPGEVPAERIGERQPDSGLSALSAIAGYYRLPANAGAIARQLAITGPAGTDDLLRAARLIGLKARSIAATAGR IATMPVPAIACLTDSSFAVFGGKSGEGSFRLVNPVDFSSRDVDTAELLRLTGGRFILIQRRFGGPGADPAAFGFRWFLPS IWRYRRAFGHVLIASLFVQLFALITPLFFQVVVDKVLAHRSYSTLIVLVVGLAVVGLFDVVLQYLRTYALSHTTNRIDVE LGRRLFRHLLSLPLDYFETRPTGQTVARIRELETIRAFLTGQGLFSGLDLIFTFVFIFVLFSYSKTLAWIVVASIPFYLA IGFLVRPFLKERIDEKFERGAWSQQLLVETVVGVQTLKAAAVEPVVSADWEERLAAYVKSSFLATMLAAKGQNAVQYINK VTSAALLLFGAQAVIDGHLTVGALVAFNMIAGQVSQPILRLSQLWQDFQQVQVSVSRLADILNAPAEPRPAATISLPPPR GAIAFKSVGFRYAHNAPDVLKNVTLAVRPGEVLGIVGPSGSGKSTLTKLVQRFYIPQTGQVFVDGHDIAQVDPAWLRAGI GVVLQENMLFNRSIHDNIALANPAMSRAAVMRVARLSGADEFIAKLPRGYDTQIEERGANLSGGQRQRLAIARALATNPP ILILDEATSALDYESERIVLANMREIVKGRTVIIIAHRLATVRHCDRIIGMKDGRIIEEGSHEVLVARPNGLYSHLWQLQ TGAAQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 2e-144 | 50 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 2e-144 | 49 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 2e-144 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Smed_0884 | YP_001326574.1 | type I secretion system ATPase | VFG0907 | Protein | 8e-145 | 50 |
| Smed_0884 | YP_001326574.1 | type I secretion system ATPase | VFG0841 | Protein | 4e-137 | 50 |
| Smed_0884 | YP_001326574.1 | type I secretion system ATPase | VFG1557 | Protein | 1e-144 | 49 |
| Smed_0884 | YP_001326574.1 | type I secretion system ATPase | VFG1501 | Protein | 1e-144 | 49 |
| Smed_0884 | YP_001326574.1 | type I secretion system ATPase | VFG1269 | Protein | 4e-125 | 47 |
