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Name : rpoB (mma_3420) Accession : YP_001355110.1 Strain : Janthinobacterium sp. Marseille Genome accession: NC_009659 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta/140 kD subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 3794180 - 3797902 bp Length : 3723 bp Strand : - Note : - DNA sequence : ATGGGCGAATTGCCTTTGATGACTTCGACCGGTTCCTTCGTGATTAACGGTACAGAGCGCGTTATCGTGTCGCAGTTGCA TCGTTCGCCAGGCGTGTTCTTTGAACATGATCGCGGCAAGACGCACTCGTCCGGTAAATTGCTGTTCTCCGCACGTATCA TTCCTTACCGCGGTTCATGGCTGGACTACGAATTCGATCCGAAAGACATCCTGTTCTTCCGCGTTGATCGTCGCCGCAAG ATGCCAGTCACGATCCTGTTGAAGGCAATCGGCATGACGCCGGAACAAATCCTCGAAAACTTCTTCGTTTTCGACGATTT CGCATTGCATGCCGATGGCGCCGAAATGGCTTTCGTCGCAGAACGCCTGCGCGGTGAAGTTGCACGTTTCGACATTACCG ACAAAGCCGGCAAAGTGCTGGTGGCAAAAGACAAGCGTATCAACAGCAAGCACGTCCGTGACGTGGAAGCTGCCGGCATC AAGAACATCTCGGTACCGGAAGACTACCTGCTCGGCCGTATCCTGGCGAAAAACATCGTTGATAAAGAAACCGGCGAAGT CATTGCCAATGCCAACGATGAATTGACCGAAGACCTGCTGGCACGCCTGCGCGAAGGTAAAGTAACCCACATCCAGACCC TGTACACCAACGATCTGGATCAAGGCGGCTACATCTCGCAAACACTGCGTATGGATGACACCACCGATCAGATGGCAGCG AAAGTCGCTATCTATCGCATGATGCGTCCAGGCGAACCGCCAACCGAAGATTCGGTTGAAGCATTGTTCAACGGCTTGTT CTACAACGCAGATCGTTACGACCTGTCGGCTGTCGGCCGTATGAAATTCAACCGTCGTATCGGTCGCGATGAGCTGACCG GCGACATGACCTTGTCGAACGACGACGTACTGGCCGTGATCAAGATCCTGGTTGAGCTGCGCAATGGTCGCGGCGAAGTC GATGATATCGATCACTTGGGTAACCGTCGCGTACGTTGCGTCGGCGAATTGGCTGAGAACCAATTCCGTGCCGGTCTGGT GCGTGTTGAGCGTGCTGTCAAGGAACGCCTCGGCCAAGCCGAAGCCGACAACCTGATGCCGCATGACCTGATCAACTCGA AGCCGATCTCGGCAGCGATCCGTGAATTCTTCGGTTCGTCGCAGTTGTCGCAATTTATGGATCAAACCAATCCATTGTCG GAAATCACGCACAAACGTCGCGTCTCCGCTCTCGGACCTGGCGGCTTGACCCGTGAACGCGCAGGCTTTGAAGTACGTGA CGTGCATCCGACCCACTACGGCCGTGTATGCCCGATCGAAACACCAGAGGGCCCGAACATTGGTCTGATCAACTCGCTGG CTCTGTATGCCCGCCTGAACGAATACGGTTTCCTGGAAACCCCATATCGTAAAGTCGAAGGCAGCAAAATCACCGACCAG ATCGATTACCTGTCCGCGATTGAAGAAGGCCGTTACATCATCGCTCAGGCGAATGCGACCATCGACAAATCGGGCGCGCT GTCAGATGAATTGGTTTCCGCACGTGAAGCTGGCGAAACGATTCTGGTATCGCCAGAACGCGTCCAGTACATGGACGTTG CGCCAGGCCAGGTTGTATCAGTTGCTGCTTCGCTGATTCCGTTCCTCGAACACGATGACGCGAACCGCGCATTGATGGGT GCCAACATGCAACGTCAGGCTGTTCCTTGCCTGCGTCCAGAAAAAGCATTCGTTGGTACCGGTATCGAACGTACGGTTGC AGTTGACTCGGGTACCACAGTGCAGGCATTGCGCGGCGGTATCGTTGATTACATCGATGCAGGCCGTGTCGTGATTCGCG TCAATGATGACGAAGCACAAGCCGGTGAAGTCGGTGTAGATATCTACAACCTGATCAAGTACACCCGTTCGAACCAGAAC ACCAATATTAACCAACGCCCTATCGTGCAAGTCGGCGATCGCGTTGCAAAACATGACGTCATCGCTGACGGCGCATCGAC AGATCTGGGCGAATTGGCCCTGGGTCAAAACATGCTGGTCGCGTTTATGCCATGGAACGGTTACAACTTCGAAGATTCGA TTCTGATCTCCGAAAAAGTTGTGGCTGATGACCGTTACACCTCGATTCATATCGAAGAGTTGTCGGTTGTTGCACGTGAC ACCAAGCTGGGTGCGGAAGAAATCACACGTGATATCTCCAATCTGGCTGAGAACCAACTGGCACGCCTGGATGAATCCGG TATCGTCTACATCGGTGCAGAAGTGACCGCTGGCGACACCCTGGTCGGTAAAGTAACGCCTAAAGGCGAAACCCAACTGA CACCGGAAGAAAAATTGCTGCGCGCGATTTTCGGCGAAAAAGCATCCGACGTAAAAGATACATCGTTGCGCGTACCGTCC GGCATGGTCGGCACCGTAATCGACGTGCAAGTGTTTACACGTGAAGGCATTCCACGCGACAAACGTGCACAACAGATTAT CGACGACGAACTGCAACGCTATCGTTTGGATTTGAACGATCAGCTGCGTATCGTTGAAGGCGATGCATTCCAGCGTCTGG AAAAAATGTTGATCGGTAAAGTCGTCAACGGCGGTCCTAAGAAAATCGCTAAAGGCGCGAAAATCACTAAAGAGTATTTG GACGATCTGGACAAATACCACTGGTTCGATATTCGCCCGGCAGATGACACATCGGCCAATGCTTTGGAAGCTATTAAAGA ATCCATCGCTGAAAAACGCCACCAGTTCGATCTGGCATTCGAAGAAAAACGCAAGAAACTGACGCAAGGCGACGAATTGC CGCCAGGCGTACAGAAGATGGTCAAAGTGTATCTGGCAGTCAAACGTCGCCTGCAACCTGGCGACAAAATGGCGGGTCGT CACGGTAACAAAGGTGTCGTATCACGCATCTTGCCTATCGAAGACATGCCGCACATGGCTGACGGTACACCAGCAGACGT CGTGCTGAACCCATTGGGTGTTCCATCGCGTATGAACGTTGGTCAGGTTCTGGAAGTTCACTTGGGCTGGGCCGCTAAAG GTCTGGGCTTGCGTATCGGCGAAATGCTGAATGCACAAGTACAAATCGCTGAACTGCGTAAATTCCTGGCTGCGATTTAT AACGAATCTGGCAAAACGGAAGATCTGGACAGCTTCAGCGATGCAGAAATCCTGGAACTGGCTGGCAACCTGAAAAACGG CGTGCCGTTCGCAACACCGGTGTTTGACGGTGCTGATGAAGGTGAAACCCGTCGCATGCTGGATCTGGCTTACCCGGATC ACATTGCGAAGCAATTGGGTATGACCGCTTCCAAGAACCAGGTCACGATGTATGACGGTCGTACCGGTGAAGCGTTTGAA CGTACAGTAACCGTCGGTTACATGCACTACCTCAAACTGCATCACTTGGTTGATGACAAGATGCATGCTCGTTCGACCGG TCCTTACTCGCTGGTTACGCAGCAACCACTGGGCGGTAAAGCTCAGTTCGGTGGCCAGCGCTTCGGTGAGATGGAAGTCT GGGCACTGGAAGCATACGGCGCGTCCTACGTCTTGCAAGAGATGTTGACCGTCAAGTCCGATGACGTGAATGGCCGTACC AAAGTGTACGAAAATCTCGTCAAGGGCGACCACGTCATCGACGCCGGCATGCCGGAATCCTTCAACGTTCTCGTTAAGGA AATCCGCTCGCTGGGTATCGACATCGACCTGGAACGCGACTGA Protein sequence : MGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSWLDYEFDPKDILFFRVDRRRK MPVTILLKAIGMTPEQILENFFVFDDFALHADGAEMAFVAERLRGEVARFDITDKAGKVLVAKDKRINSKHVRDVEAAGI KNISVPEDYLLGRILAKNIVDKETGEVIANANDELTEDLLARLREGKVTHIQTLYTNDLDQGGYISQTLRMDDTTDQMAA KVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGRDELTGDMTLSNDDVLAVIKILVELRNGRGEV DDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLS EITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSKITDQ IDYLSAIEEGRYIIAQANATIDKSGALSDELVSAREAGETILVSPERVQYMDVAPGQVVSVAASLIPFLEHDDANRALMG ANMQRQAVPCLRPEKAFVGTGIERTVAVDSGTTVQALRGGIVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQN TNINQRPIVQVGDRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVARD TKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPS GMVGTVIDVQVFTREGIPRDKRAQQIIDDELQRYRLDLNDQLRIVEGDAFQRLEKMLIGKVVNGGPKKIAKGAKITKEYL DDLDKYHWFDIRPADDTSANALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMAGR HGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGLRIGEMLNAQVQIAELRKFLAAIY NESGKTEDLDSFSDAEILELAGNLKNGVPFATPVFDGADEGETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFE RTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRT KVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 82 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_008702.1.4609796. | Protein | 0.0 | 77 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011035.1.6448762. | Protein | 0.0 | 74 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002516.2.881699.p | Protein | 0.0 | 68 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000034.1.gene3741. | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001138.1.gene4362. | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_002695.1.914942.p | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP001918.1.gene250.p | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP004022.1.gene2794. | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000647.1.gene4402. | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| rpoB | YP_001355110.1 | DNA-directed RNA polymerase subunit beta/140 kD subunit | CP000675.2.gene392.p | Protein | 0.0 | 66 |
