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Name : secD (Shew185_2805) Accession : YP_001367002.1 Strain : Shewanella baltica OS185 Genome accession: NC_009665 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3361687 - 3363537 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGATGCTCGTCATCGCCATAGGTTGTTTCTATGCCGTACCGAA CCTTTTTGGTGAAGATCACGCGGTGCAAGTGGTGGCGACTCGAGGTGCTGAAGTCACGGCATCAACCCAAGCCAGTGTGA ACGAGCTGTTAGCCAGTAAGGGCATTGCGGTAAAGCGCTCTGAGCTTGAAAAAGGTCAGTTGTTGGTCCGTGTGCAAAAT GCGGATCAACAGCTACTGGCGAAAGAATTAATTGCTGACAGCTTAGGTGACAAGTTCACTGTGGCGCTCAACTTAGCCCC AGCGACGCCTAAATGGCTCGAGTCAATGGGCGGCAGCCCAATGAAACTCGGTCTCGACCTTCGCGGCGGTGTGCATTTCT TAATGGAAGTGGACATGGGCGAAGCGATTCGCAAGATGGAAGAGGCTAAAGTTGCCGATTTCCGTTCACAATTACGCGAA GAGAAAATTCGTTATGCTGGTATTCGTAGCAATACCACAGGTATCGAAATCAAGTTCCGTGATGCTGAAAGTCTCGCGAG TGCAGAGCGTTTCCTTAAGTCTCGCAGTAAAGATATGGTGTTCACTGATGCTAGCCGTGGCGAAGATTTTGCCCTGCAAG CTGTGATGAGTGACGTGTACCTTAAGCAGATTAAAGAAGAAGCACTGCAACAAAACATTACTACCATTCGTAACCGTGTA AACGAGTTAGGTGTGGCTGAGCCTGTAGTACAACGTCAAGGCGCCGAGCGCATTATCGTTGAGCTGCCAGGTGTGCAAGA TACGGCTCGCGCCAAGGAAATCTTAGGTGCAACCGCATCGATTGAATTCCACATGGTCGATGACAAAGCCGATCCTAATG CTGCGCAATCTGGCCGTTTACCAGCGGGTTCTGAAGTGTACCAGCGCCGCGAAGGTGGCACTGTGATATTGAAGAAAGAA GTTATGCTGACCGGTGATCATATCACGGGCGCACAACCTAGCTTTGACCAGTACAGTCGTCCACAGGTTAGCATCAACCT TGATGCGAAAGGCGGCACCATTTTCTCTGACGTGACCAAAGACAACATAGGCAAGCCTATGGCGACATTGTTCATCGAAT ATAAAGATAGTGGTGAGCGTAATGCCGACGGCAGCGTTAAGATGCAGAAAATCCAAGAAGTGATTTCTGTTGCGACCATT CAAGCGCGTTTAGGCCGTAACTTTGTGATCACTGGCTTAAGCCATGGTGAAGCACAAAACCTCGCGCTATTACTGCGTGC GGGTGCCTTGATTGCCCCAGTGTCGATTGTTGAAGAACGTACCATTGGTCCAAGCTTAGGTGCTGAAAACATTCAAAACG GTGTGCAAGCTATGGTCTGGGGTATGGCAGTTGTCTTACTCTTTATGCTGGTTTACTACCGTGGCTTTGGTCTTATCGCC AACATAGCGCTAACCGCAAACTTAGTCATGGTGGTGGGCGTAATGTCTATGATCCCTGGCGCAGTGTTAACCCTACCGGG TATTGCCGGTATGGTGTTGACTGTGGGTATGGCGGTTGACGGTAACGTGCTGATCTATGAGCGTATCCGTGAAGAATTAC GTGCGGGCCGTAGCGTTCAGCAGGCCATCCATGAAGGTTATGGTAACGCATTCTCCACCATCGCCGATGCGAACATCACC ACTTTCCTAACGGCGCTGATTCTGTTTGCCGTAGGTACGGGCGCTGTTAAAGGCTTCGCGGTGACCTTGATGATAGGTAT TGCGACTTCCATGTTTACCGCAATCGTGGGTACTCGCTCAATCGTTAACGCGATTTGGGGCGGTAAGCGCGTGAAGACTC TGTCTATCTAA Protein sequence : MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASKGIAVKRSELEKGQLLVRVQN ADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE EKIRYAGIRSNTTGIEIKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKE VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-125 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-126 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-125 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-125 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-125 | 48 |
