|
Name : YpsIP31758_1889 (YpsIP31758_1889) Accession : YP_001400864.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Virulence Product : type I secretion system ATPase Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 2189866 - 2192004 bp Length : 2139 bp Strand : - Note : identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846 DNA sequence : ATGACGGAGTCTTATTCAACTCTGGCCGCCGAGGGCACCAAGGTTATTCAGCCACTGGAGGCGTTGGCGTGTGCTGCTAC CTGTTTTGATTTAACCATCGAAGCTTCGCAATTGGCACACCAACTAGGCTTAGCTCCCGATGAGATAGACAGTATTGCCT TGTGCCGTTGTGCTGCTTGGATAGGGTTACGAGCGCGGAAAGTTAATCAGTCTTTTGAACGTGTGGGAAAGCTGGTATTA CCCGTTTTATTCAGTGATGGTGCTCAGTGGTATGTTTTGCTGTCGCTGACCGCGCAGGAGGCCACTGTCTATTTTGCAGG CAGCGACCAGACGCGGAAAATAAGTCCAGAAGTCCTTGCAAAATTGTGGCGCAATGAGGTGATTTTGCTGGCGAAAGCGG AACCGATAACGGCCAAAAAGCAGTTTTTCGGTTTTAGCTGGTTTATTCCGGTGGTGATGAAGTCCCGGCATCAGCTACGT AACATTATTCTTATCTCATTACTGCTACAAGCCATTTTACTCGTCACGCCAATGCTATTTGAAACCGTTATCGATAAAGT GTTGGTAAGCCGCGGGGTCGATAGTTTGGTGGTTCTAGGTGGAGCCATGGTGGCACTGGCGATTGCTGAACCGGGGTATA CCTTATTACGTAGCTGGCTGTTTGCGCATTTGTCCAGCAGGGTGGGGGCTGAACTCAATACACAGTTATATCGGCATCTT CTGGGGCTGCCACTGGGGTATTTTACCGGCCAACAGACAGGGCAAACTATCGCCAAGATGCGAGAAATGGAGCAAATTCG CAGCTTCCTTACGGGCTCAGCCCTGACTATGGTGTTGGATCTGTTTTTTGTCGTCACCTTTATTGCCGTGATGTTTCGCT ACAGTGGTCAATTGACGGGGATCGTATTGATTTCCCTGCTTTGTTATCTGCTATTTTGGTCGGCAGTTGGGGGGCGGTTA CGCAAGCGAGTGGCGCAGCAATACGAAACCAGTGCGCAAGCAACCTCGTTCCTGACCGAGGCGGTCAGCGGGGTAGAAAC CATCAAAACCTCGGCAACCGAAAGTCAGTTTAACCGGCGTTGGCGTCAAGTATTAGCACGCTATGTACGGGCCTCTTTTG GCAGTTCGCAGGCAGGGAACTTGGCAGGTCAAGGGATCTCGCTCATTAATAAAATAACGTCAGCAATTCTGTTATGGTTT GGCGTGACCCTCGTATTGGCAGGAAAACTCAGCCCAGGTGAACTGGTGGCGTTTAATATGTTTGCCGGTTACGTAACCCA ACCTATATTACGCTTGGCTCAGGCATGGCAAGACTTCCAACATACGCAGATTGCGCTGGAGCGGATTGGCACCATTCTGG ATAGCCCCACCGAACCCGGAAGTGCCGGGCTGGTTGCCAACTGCGAACGGGCAGGGAGCTTAAGTTTTAAGCAAGTGCGC TTCCGTTATCGCCCTGATACCGCAGAAGTTTTACAAAATCTCAATCTGGAGATTGCCGGTGGAGAATTTATCGGCATTAC CGGGCCATCGGGGTGCGGTAAATCGACACTGACCAAGCTAATGCAACGCTTATATACGCCACAACATGGGCAGATTCTGG TCGATGGGCAGGATTTGGCGATTACTGACCCCACCACGCTGCGCCGTCAAATGAGTGTGGTATTGCAGGAAAGCGTTCTA TTTTCGGGCAGCATTCGGGACAATATTTGTCAATGTCGGCCCAATGCAGATGAGGCTCATGTGATACATATTGCCCGGTT GGCCGGGGCGCATGATTTTATTATTGCGTTGCCGCAGGGTTATCAAACTCAGGTCGGTGAAAAGGGGGGGCTGCTTTCTG GCGGGCAACGTCAGCGGATTGCACTGGCAAGGGCGCTGATGGCTGATCCCAAGATTCTTATCCTTGATGAAGCAACCAGT GCGTTGGACTATGAATCGGAGGCGGCGATTATGCGCCAATTACCGGAAATCACCCGTAACCGCACGGTTATCTGCATTGC ACACCGTTTGAATACACTACGTCAGTGCCACCGCATTTTGTTACTAAAAGATGGGCAAATTGCGGAGCAAGGTAGTCATG AAGTCTTGGTAGCAAGTGGTGGGAATTACGCTCGTCTGTGGCAACAGCAGACAGAGTAG Protein sequence : MTESYSTLAAEGTKVIQPLEALACAATCFDLTIEASQLAHQLGLAPDEIDSIALCRCAAWIGLRARKVNQSFERVGKLVL PVLFSDGAQWYVLLSLTAQEATVYFAGSDQTRKISPEVLAKLWRNEVILLAKAEPITAKKQFFGFSWFIPVVMKSRHQLR NIILISLLLQAILLVTPMLFETVIDKVLVSRGVDSLVVLGGAMVALAIAEPGYTLLRSWLFAHLSSRVGAELNTQLYRHL LGLPLGYFTGQQTGQTIAKMREMEQIRSFLTGSALTMVLDLFFVVTFIAVMFRYSGQLTGIVLISLLCYLLFWSAVGGRL RKRVAQQYETSAQATSFLTEAVSGVETIKTSATESQFNRRWRQVLARYVRASFGSSQAGNLAGQGISLINKITSAILLWF GVTLVLAGKLSPGELVAFNMFAGYVTQPILRLAQAWQDFQHTQIALERIGTILDSPTEPGSAGLVANCERAGSLSFKQVR FRYRPDTAEVLQNLNLEIAGGEFIGITGPSGCGKSTLTKLMQRLYTPQHGQILVDGQDLAITDPTTLRRQMSVVLQESVL FSGSIRDNICQCRPNADEAHVIHIARLAGAHDFIIALPQGYQTQVGEKGGLLSGGQRQRIALARALMADPKILILDEATS ALDYESEAAIMRQLPEITRNRTVICIAHRLNTLRQCHRILLLKDGQIAEQGSHEVLVASGGNYARLWQQQTE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 2e-140 | 44 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 2e-140 | 44 |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 2e-140 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YpsIP31758_1889 | YP_001400864.1 | type I secretion system ATPase | VFG0841 | Protein | 5e-137 | 45 |
| YpsIP31758_1889 | YP_001400864.1 | type I secretion system ATPase | VFG1269 | Protein | 2e-138 | 45 |
| YpsIP31758_1889 | YP_001400864.1 | type I secretion system ATPase | VFG0907 | Protein | 1e-140 | 44 |
| YpsIP31758_1889 | YP_001400864.1 | type I secretion system ATPase | VFG1557 | Protein | 1e-140 | 44 |
| YpsIP31758_1889 | YP_001400864.1 | type I secretion system ATPase | VFG1501 | Protein | 1e-140 | 44 |
