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Name : CCV52592_0182a (CCV52592_0182a) Accession : YP_004778098.1 Strain : Campylobacter curvus 525.92 Genome accession: NC_009715 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1392803 - 1396948 bp Length : 4146 bp Strand : - Note : - DNA sequence : ATGTTAAATAGCTTATACTCAGGAAATCGTCTTAGAGTTGATTTCTCTAATGTCGTCAAAGAGATAGATGTTCCTAACCT ACTACAATTACAAAAAAAGAGCTTCGATAATTTTTTAAATTTAGACAATACCCAGTCCGAAAGCGGGATTGAAAAAGTTT TTAAATCGATTTTTCCTATACATGATCCGCAAAATCGCCTAAGTTTGGAATATGTGAGCTCTGAGATCGGAAAACCAAAA TATACGATAAGAGAATGTATCGAAAGAGGCCTTACGTATTCTGTAAATTTAAAGATGAAAATTCGCCTCATCGTGCATGA AAAAGATGAAAAGACCGGCGAAAAAGTCGGCGTAAAAGATATAAAAGAGCAAGAGATTTTTATACGTGAAATTCCCCTAA TGACCGATAGAATTTCATTTATTATAAATGGCGTAGAGCGCGTGGTGGTAAACCAGCTTCACAGAAGTCCAGGCGTTATT TTCAAACAAGAGGAGAGCGCAACGGTCGCAAACAAGCTCATTTATACCGCTCAGATCATACCTGATAGAGGAAGCTGGCT ATATTTTGAATACGACACGAAAGATGTATTATACGTCAGGATAAATAAGCGCAGGAAAGTGCCGGTAACTATACTATTTA GGGCGCTCGGATATAAAAAACAAGACATTATAAAGCTATTTTATCCTATCCAAACACTAAGTATAAAAAATAATAAATTT TTAACCCCTTTTAGCCCGGATGATTATCTTGGCAGGATAGACTACGATATAAAAGACGAAGAGGGCAACGTCCTTCATCA AGCAGGTAAGCGCCTTACAAAGAAAAAGGCAGACAAGCTCATAGAAGACGGTGTTAAATGGGTCGAATACCCTACCGAGG TTTTGGTAAGCCGCTATTTGGCTAGCCCGGTCATAAACAAAGAAAGCGGCGAGGTGCTATATGACACCCTTTCTCAGCTT GATGAAAATAAACTCGTCAAAATTCTAAGCGAGCAAGACAGTATCGAGATAATAAACAACTCCGCTTCAGGCGTCGATGA TGCGATCATAAATTCATTCATCGCCGATAACGAGATGCTTAAAATTTTAAGACAAACAGAGGGTGTCGACGATGAGAACG ATCTTTCTGCGATCAGAATTTACAAGGTAATGAGGCCGGGCGAGCCTGTCGTCAAAGAGGCTGCTAAGACCTTTGTAAAC GACATATTCTTTAATCCTGAAAGATACGACCTTACGAAAGTCGGTCGTATGAAGATGAATCACAAGCTAGCCCTTGACGT GCCCGAGTATGTCACCGTTTTAACTAGCGAAGACATCATAAAGACTGCGAAATATCTCATAAAGGTCAAAAACGGACAGG GTCATATAGACGACAGGGATCACTTGGGCAACAGGCGTATCCGCTCTATAGGCGAGCTTTTAGCGAACGAGCTTCATCTT GGCTTCGTCAAAATGCAAAAAGCGATCCGTGATAAATTTACAAGCCTAAGCAACAACACAGAGGAGATCATGCCTTATGA TCTCATAAATCCAAAAATGATCACCGCAACGATAATGGAATTCTTCACTAGCGGCCAGCTCAGTCAGTTCATGGATCAGA CCAACCCTCTTAGCGAGGTCACACATAAACGTCGTCTGTCAGCGCTTGGAGAGGGCGGCTTGGTAAAAGAGCGTGCGGGC TTTGAGGTGCGCGACGTTCACCCGACTCACTACGGCAGAATTTGCCCTGTCGAGACACCGGAAGGTCAAAACATCGGCCT TATAAATACACTTTCGACATACGCGAAGGTAAATGACCTTGGTTTTGTCGAAGCTCCTTATAAAAAAGTCGTCGATGGCA AAGTGATCGACGAGATCGTTTATCTGACGGCTACTCAAGAGGAGGGCAACGTTATCGCTCCAGCCTCTACCAAGCTTGAT GAAAACGGCTACATCGTAGAGGATCTCATCGAGGTCAGACGCGAGGGCGAGATGATGCTTGCGCGACGCGAGGATGTCAC TTTGATAGATTTGTGCTCCGGTATGATAGCCGGTGTCGCAGCTTCGCTTATCCCGTTTTTGGAACATGATGATGCGAACC GTGCATTGATGGGCTCAAACATGCAGCGCCAAGCAGTGCCGCTTCTTCGCTCTACGGCTCCTATCGTGGGAACGGGCATG GAAAGCGTCATAGCTCGTGATGCGTGGGAAAGCATAAAAGCACGCCGCGGTGGCATAGTCGAAAAGGTAGATAACAAAAA CATCTTTATCTTAGGTGAGGACGAGGCCGGTCCTTATATCGATCACTACTCGCTTGAGAAAAATTTAAGGACCAATCAAA ATACTACATTTTCTCAACACCCTATCGTCAAAAAAGGCGATGAGATAAAAGAGGATCAGATAATAGCCGATGGCCCTAGC ATGGAAAAGGGCGAGCTTGCTATCGGCAAGAACGCCCTTATCGCGTTTATGCCTTGGAACGGCTACAACTACGAGGATGC TATCGTCATCAGTGAAAAGATGATTCGCGAGGATGCATTCACTAGCGTCCATATTTATGAAAAAGAGATCGAAGCTCGCG AGCTAAAAGACGGCGTAGAGGAGATCACCAAAGACATACCTAATATCAAAGAAGAAGACCTGCTTCATCTTGATGAAAGC GGTATCGTAAAGATAGGCACGCAGATAAAGCCCGGTATGATATTAGTCGGTAAAGTCTCTCCAAAAGGCGAAGTGAAGCC GACCCCAGAGGAGCGCTTGCTACGCGCGATATTTGGTGAGAAAGCCGGTCATGTGGTAAATAAATCGCTTTACGCTTCGG CCTCTATGGAAGGTGTCGTCGTAGATGTCAAAATTTTTACCAAAAAGGGCCACGAAAAAGACAGCAGAACGCATAAAGCC TACGAGGAAGAGAAGGCCCTTTTGGAAAAAGAACACCACGACAGGCTATTGATGCTAGATAGAGAGGAGATGCTAAAGGT CACTTCGCTACTATCTAAGAGCCAGCTTACCAGTGAGCAGTCTATCAATAAAAAGACATATAAGAAGGGCTCGAAAATCA ACAAAGCCGATCTTGAAAACATCAACCGCTTCACGCTGAATTCTATCGTAAAGGGCTTTTCAAAAGAGGTTCAGAAAAAA TATGACGAGCTTAAAAACTATTTCCAAAACGAGAAGAAAAAGCTAAAAGAGGAGCATGACTCCAAGATCGAAATTTTAGA AAAAGACGATATCCTGCCAAGTGGCGTAGTCAAACTGGTCAAGGTCTATATCGCCACTAAGCGCAAGCTAAAAGTAGGCG ATAAGATGGCCGGTCGCCACGGCAACAAAGGTATCGTCTCAAATATCGTGCCAGAAGTCGATATGCCGTATCTTCCGAGC GGTCAGATCGTTGATATCGTGCTAAACCCTCTTGGCGTTCCTAGTCGTATGAATATCGGTCAAATTTTGGAGTCTCACTT GGGCCTTGTAGGATATCGCTTGGGCGAGCAGATAAATGAAATTTTTGAAACCAAAAAAGGCGAGTGGCTAAAAGAGCTAA GGGCCAAGATGATAGAGATCGCAAGCGTTTCAAAGCTTATGAACGCTAAAAATGCACTTGGCAAGATGAGCGATGAGAAG CTGCTTGAATACGCAAAGGATTGGAGCAACGGCGTTAGATTTGCCACTCCTATTTTTGAGGGCGTCAAAGCCGATGAATT CGTCAAATTATTTGAGATGGCAAAGATCGATAGTGACGGTAAGACCGAGCTTTACGACGGACGAACGGGCTCGAAAATTC GCGAACGCGTCAATGTGGGCTGCATGTATATGCTAAAACTCCACCACCTAGTCGATGAGAAAGTCCACGCAAGAAGCACG GGACCATACAGCCTAGTCACTCAGCAGCCAGTCGGCGGCAAGGCGCTATTTGGCGGTCAAAGATTTGGAGAGATGGAGGT TTGGGCGCTTGAGGCTTATGGCGCAGCGCATACGCTTAGAGAGATGCTGACTGTCAAATCAGACGATGTAGACGGCCGTT TGTCTGCTTATAAGGCATTGACACGCGGAGAGAACGTGCCGGAGACTGGCATCCCTGAGACTTTCTTTGTTCTGACCAAC GAGCTAAAGTCGCTAGCTCTTGATGTAGAAGTATATGATGAGGACGAGACAAATGAAAATGAATAA Protein sequence : MLNSLYSGNRLRVDFSNVVKEIDVPNLLQLQKKSFDNFLNLDNTQSESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPK YTIRECIERGLTYSVNLKMKIRLIVHEKDEKTGEKVGVKDIKEQEIFIREIPLMTDRISFIINGVERVVVNQLHRSPGVI FKQEESATVANKLIYTAQIIPDRGSWLYFEYDTKDVLYVRINKRRKVPVTILFRALGYKKQDIIKLFYPIQTLSIKNNKF LTPFSPDDYLGRIDYDIKDEEGNVLHQAGKRLTKKKADKLIEDGVKWVEYPTEVLVSRYLASPVINKESGEVLYDTLSQL DENKLVKILSEQDSIEIINNSASGVDDAIINSFIADNEMLKILRQTEGVDDENDLSAIRIYKVMRPGEPVVKEAAKTFVN DIFFNPERYDLTKVGRMKMNHKLALDVPEYVTVLTSEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLANELHL GFVKMQKAIRDKFTSLSNNTEEIMPYDLINPKMITATIMEFFTSGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAG FEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDLGFVEAPYKKVVDGKVIDEIVYLTATQEEGNVIAPASTKLD ENGYIVEDLIEVRREGEMMLARREDVTLIDLCSGMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSTAPIVGTGM ESVIARDAWESIKARRGGIVEKVDNKNIFILGEDEAGPYIDHYSLEKNLRTNQNTTFSQHPIVKKGDEIKEDQIIADGPS MEKGELAIGKNALIAFMPWNGYNYEDAIVISEKMIREDAFTSVHIYEKEIEARELKDGVEEITKDIPNIKEEDLLHLDES GIVKIGTQIKPGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYASASMEGVVVDVKIFTKKGHEKDSRTHKA YEEEKALLEKEHHDRLLMLDREEMLKVTSLLSKSQLTSEQSINKKTYKKGSKINKADLENINRFTLNSIVKGFSKEVQKK YDELKNYFQNEKKKLKEEHDSKIEILEKDDILPSGVVKLVKVYIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPS GQIVDIVLNPLGVPSRMNIGQILESHLGLVGYRLGEQINEIFETKKGEWLKELRAKMIEIASVSKLMNAKNALGKMSDEK LLEYAKDWSNGVRFATPIFEGVKADEFVKLFEMAKIDSDGKTELYDGRTGSKIRERVNVGCMYMLKLHHLVDEKVHARST GPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTVKSDDVDGRLSAYKALTRGENVPETGIPETFFVLTN ELKSLALDVEVYDEDETNENE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 46 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| CCV52592_0182a | YP_004778098.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
