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Name : rpoB (Fnod_1782) Accession : YP_001411272.1 Strain : Fervidobacterium nodosum Rt17-B1 Genome accession: NC_009718 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1937445 - 1940993 bp Length : 3549 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGAAAACCTACCAAATTGGTAAACGTACAAGGTATTCTTTCGGTAAGGTTGATGAGATTATCCAAGTACCCGACCTTGT TGAAATCCAGCGAAAGTCTTTCGAAGAGCTTTTGAACCATGGTATTTTACGTATTCTTAAGAAGTTTAGCCCTATAACTT CTGCAAAAGTTGAAGGCAGAAGAGAGAAGGGCTTCAATCTTGAGTTTGTAAACTTCAGAGTTGGTGCGCCACTTCACAGT GTTGAAGAATGTAAGCAAAGATTGTTAACTTATGTAGCTCCATTCTATGCAACAGTTAGGGTCACAGATGTTTCAACCGG AGAAATGCGTGAAGAAGAGGTTTCTCTTGGAAACTACCCAATAATGACTGAAAATCAAACTTTTGTAATTAACGGTGTTG AAAGAGTTGTTGTAAGTCAACTTGTTAGAAGCCCTGGCGTATATTTTGTCGAAGAACCAACAAAAAATATTGGTGCTAAA CCTATATACCTTGCTCATTTTCTACCGGTTCGTGGCGTATGGTTAGAAATAATGCTTAACTTAAACGATGAAACACTTTA CGCAAGAATTGATAGAAGAAAAAGACTCAATCTATTCCTTGTCTTAAAAACACTTGGATTTCAAAATGATATAGATATAC TCTCGCTCTTCCCGGCTTACTTAGATGTCGAAGACGACTATTCTTTAAAACAATCTGAAGGAATAATTATTCTCGAGAAA ATTGTTTCAAAAAGCGGAGAAGTAATTGCAGAAAAAGGGTCAGTTCTAACTTCGACACTTGTCGAAATATTAAGAGAACA TGGAATTGAAAAAATTAAAGTTGTTAATAACTATATGTTCAAAACATACATGAAGCTTAAAGAAAAACTCAAAATGCCAT TAGAAGAAAATATCAGTGAGTTAAGAGCTTTCATGGAAATATACAAGGAATTAAGACCCGGAGAAGTATTCAGATACAAT GCCGCAAAATCATATTGGAATAACCTTTACTTTAATGAAGAAAGGTTTGAACTTTCAGAAGTCGGTCGCTATAAAATGAA TAAAAAATTGACAAATGCCTATAGAAAATATTTGATTGAAATAGAAGGAAGAAATCCAAAAAGTGTTGAACGGATAGAAT ACGAAGAAAAATCGAATGCTCTTACACCAATAGATATTATCTTGGTTATTAGAATGCTCCTTGAAACAGAAAAACATCCA GAAACGTTGGATACCAAAGACCATCTATCGAATAAGAGAGTTAAAACAGTTGGTGAACTTATAGGTTCAGAATTTGAAAG AGCATTTTCGAAATCAATACATCAAATACAAGAAAAATTAGCTACCTATACAAGTTTAGATAAAATATCTATTCCAAGTT TAATAAACTTGAGAAATGTTATAGCTTCATTGAATAGCTTCTTCGCTACAAACCCACTCTCCCAATTTATGGACCAAGTA AATCCAATTGCTGAATTAACGCACAAAAGAAGGCTAACTGCAGTTGGACCTGGCGGTCTAAAAAGAGAAAGAGCAAGATT TGAAGTTCGTGACGTTCACCACTCACACTATGGGAGGATGTGTCCTATCGAAACACCTGAAGGTGGTAACATTGGTCTTA TAACATCACTTTCAGTTTATGCGACTATTGATGAATACGGATTTTTGGTAACACCTTACAGAAGAATCACCAATGGAAAA TTAGCAAACGAAGTGGTCTATTTAGCTGCTGATGAGGAAGAAAACTACAAAATAGCATCTGTAACAATCGCTTTTGACAA AGAAGGGAATATAATACAAGAAAGGGTCCCCGTAAGGTACCTTGAAAAAATAGTTTACGTTCACAAAAATGAAGTAGATC TTGTAGATATCTCTCCAAAGCAGATAGTTAGTGTTACAACATCACTTATACCATTCTTGGAACACGATGACGCAAATCGC GCGTTGATGGGTTCAAACATGCAAAGACAAGCTGTTCCTGTTATAAAGCCAGAAGCACCATTTGTAGGTACAGGAATGGA ATACGCAGCGGCTATTTACTCAGGTCACGTAGTGTTAGCAAAGAATGATGGTGTAGTTAAAAAGGTTGATGGTAGAAAAA TTATCATTCACAGAATAGATGAAAATGGTCAACTAATGTACGATAAAAAAGGTAACCCAATAATTGACGAATACACACTT CTAAAATATGTAAGGTCAAACCAAGATACATCAATAACGCAAAAACCAATCGTCAATGTTGGTGATTTCGTAAAGAAAGG CTCGCCAATCGCTGATGGTCCAGCAACTGACAATGGAGAACTTGCACTTGGAAAGAATGTACTCGTTGCATTTTTACCAT GGGAAGGTTACAACTTTGAAGACGCAATATTGGTAAGTGAAGAGCTTCTTGAGGAAGATACATTTACATCCGTACATATA GAGGTTTACGAAACAACAGCAAGAGAAACAAGAGTTGGTCCAGAAGAAATTACATCAGAAATACCAAATGTTTCAAAAGA AAATATTAGAAACCTTGACGAGAATGGAATAATAAGGATAGGTGCGTACGTTGGTAAACAAAAATACTTTACATCACAGG ATATATTAGTTGGTAAAGTAACACCAAAAGGTGAAAGTGACGCAAGTCCAGAAGAAAAAATTATGAGATCAGTCTTTGGT GAGAAAGGTAAAGATGTAAAGGATTCTTCATTGAGGGTACCACATGGTGTTGAAGGAAGAGTTATAGGCGTTCACGTTTT CCATAAAGAAGAAGTCGGTGATTTGGGACCTGGCGTAAATACACTTGTGAGAGTCTACTTGGCAACTAGGAAACCATTAG AAGTCGGTGACAAACTCGCTGGTAGACACGGTAATAAAGGTGTTGTCTCGATGATTCTTCCAAAAGAAGATATGCCGTTC TTACCAGATGGTACACCGGTTCAAGTTGTGCTTAGTCCTCTTGGTGTTCCATCACGTATGAATATCGGTCAGGTGCTTGA AACATCGCTTGGTTGGCTCGCAAAATTAACTAACAGATACTTTGCAACGCCTGTATTTGATGGAGCAAAAGAAGATGACA TACTACCAGAACTTTACAAAGTAAGAGAAACACTTAACTTACATCATGGCGATGATCCAAATAATCCATCTGGAAAAGTC ACGCTCAGAGATGGTAGGACAGGTAAAGAATTTGATTTCCCAGTATTAGTTGGTTACATGTACATTATGAAACTTATCCA CATAGCTCGAGATAAAATACACGCACGAGCAACAGGTCCATATTCGCTTATTCACCAGCAACCACTTGGTGGTAAAGCAC AATTTGGTGGTCAAAGATTTGGTGAAATGGAAGTTTGGGCACTTGAAGCCTACGGAGCATCTTACACACTCAACGAAATG TTAACAGTAAAGAGCGATGACATAAAGGGAAGAACAGAAGTTTACAAAGCTATAATGAAGAGTAAAAATCTCCCAGAACC CGGGTTACCTGAGAGCTTTAAAGTTCTTGTCAGAGAACTTAAAGGTTTAGCTTTGGATGTAAGAGTATACGATGAACACG GAAATGAAATAGATATTGAAAAATTATAA Protein sequence : MKTYQIGKRTRYSFGKVDEIIQVPDLVEIQRKSFEELLNHGILRILKKFSPITSAKVEGRREKGFNLEFVNFRVGAPLHS VEECKQRLLTYVAPFYATVRVTDVSTGEMREEEVSLGNYPIMTENQTFVINGVERVVVSQLVRSPGVYFVEEPTKNIGAK PIYLAHFLPVRGVWLEIMLNLNDETLYARIDRRKRLNLFLVLKTLGFQNDIDILSLFPAYLDVEDDYSLKQSEGIIILEK IVSKSGEVIAEKGSVLTSTLVEILREHGIEKIKVVNNYMFKTYMKLKEKLKMPLEENISELRAFMEIYKELRPGEVFRYN AAKSYWNNLYFNEERFELSEVGRYKMNKKLTNAYRKYLIEIEGRNPKSVERIEYEEKSNALTPIDIILVIRMLLETEKHP ETLDTKDHLSNKRVKTVGELIGSEFERAFSKSIHQIQEKLATYTSLDKISIPSLINLRNVIASLNSFFATNPLSQFMDQV NPIAELTHKRRLTAVGPGGLKRERARFEVRDVHHSHYGRMCPIETPEGGNIGLITSLSVYATIDEYGFLVTPYRRITNGK LANEVVYLAADEEENYKIASVTIAFDKEGNIIQERVPVRYLEKIVYVHKNEVDLVDISPKQIVSVTTSLIPFLEHDDANR ALMGSNMQRQAVPVIKPEAPFVGTGMEYAAAIYSGHVVLAKNDGVVKKVDGRKIIIHRIDENGQLMYDKKGNPIIDEYTL LKYVRSNQDTSITQKPIVNVGDFVKKGSPIADGPATDNGELALGKNVLVAFLPWEGYNFEDAILVSEELLEEDTFTSVHI EVYETTARETRVGPEEITSEIPNVSKENIRNLDENGIIRIGAYVGKQKYFTSQDILVGKVTPKGESDASPEEKIMRSVFG EKGKDVKDSSLRVPHGVEGRVIGVHVFHKEEVGDLGPGVNTLVRVYLATRKPLEVGDKLAGRHGNKGVVSMILPKEDMPF LPDGTPVQVVLSPLGVPSRMNIGQVLETSLGWLAKLTNRYFATPVFDGAKEDDILPELYKVRETLNLHHGDDPNNPSGKV TLRDGRTGKEFDFPVLVGYMYIMKLIHIARDKIHARATGPYSLIHQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLNEM LTVKSDDIKGRTEVYKAIMKSKNLPEPGLPESFKVLVRELKGLALDVRVYDEHGNEIDIEKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 2e-168 | 43 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 2e-168 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 52 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 9e-169 | 43 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 9e-169 | 43 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 9e-169 | 43 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 9e-169 | 43 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 9e-169 | 43 |
| rpoB | YP_001411272.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 3e-164 | 42 |
