|
Name : Plav_2729 (Plav_2729) Accession : YP_001413994.1 Strain : Parvibaculum lavamentivorans DS-1 Genome accession: NC_009719 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 2933201 - 2937289 bp Length : 4089 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: bbt:BBta_5081 RNA polymerase, beta subunit DNA sequence : ATGACGCAGTCCTTCACTGGTCGAAAGCGGGTTCGTAAGGTCTTCGGGCACATTCCGCAGATCGCGGAAATGCCGAACCT GATCGAGGTTCAGAAATATTCATACGACCAGTTCCTGCAGGTTGATGAACCGACGGGTGGCCGCGAGGAGCAGGGGCTTC AGGCGGTTTTCAAGTCGGTTTTCCCGATCAGCGATTTCTCCGAGTCTTCGACACTCGAATTCGTGAACTACGAATTCGAA ACGCCGAAGTACGACGTCGAGGAATGCCAGCAGCGGGGTATGACCTTTGCCGCGCCACTCAAAGTGACGCTTCGCCTCAT CGTATTCGAAGTCGATGAGGACACGGGTGCCAAATCCGTCAAGGACATCAAGGAGCAGGATGTCTACATGGGCGACATGC CGCTCATGACGGAGAATGGTACCTTCGTCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGATGCACCGCAGCCCCGGG GTCTTCTTCGACCACGACAAGGGCAAGACACATTCGAGCGGCAAGCTGCTGTTTGCTGCGCGCGTGATCCCCTATCGCGG TTCGTGGCTCGATTTCGAGTTCGACGCGAAGGACATCGTATTCGTGCGTATCGACCGTCGGCGCAAGCTTCCGGTGACGA CGCTGCTTTATGCGCTGGGTCTCGATTCCGAAGAAATTCTCAGCACGTTCTACAACAGCGTTACCTTCACCAAGGTGAAG CAGGGCTGGCGCGTACCGTTCAATGCAGACCGCTACCGCGGTGCGAAGCCGGAGCGCGATCTGATCGACGCGAAGACGGG CAAGGTTGTGGTCGAAGCTGGCCGGAAGGTTACGCCGCGTCTCGCGAAGAAGCTCGCGGAAGAGGGGTTGAAGGAACTCC TCGTTCAGGATGAGGACATCCATACGCGCTACCTCGCGCAGGAAATCGTCAACATGGAGACCGGTGAAATTTTCGCCGAG GCCGGTGACGAAATCACGCCCGAGCTTCTGGAAGCGCTGGTCGAGGCTGGCCATACGGACATCATCACGCTCGACATCGA CCATGTGAACACGGGCGCCTTCATCCGCAATACGCTCGCGGTGGACAAGTGCACGAACCGGGAGCAGGCGCTGATCGACA TCTACCGCGTCATGCGCCCCGGCGAGCCGCCGACGGCGGATACGGCGGAAGCGCTGTTCAAGAGCCTGTTCTTCGATGCC GAACGCTATGACCTTTCGGCGGTTGGCCGCGTGAAGATGAACATGCGTCTCGACCTCGACGTGTCGGATACGGTGCGCGT GCTTCGCAAGGAAGACATTCTTGCTGTCATCAAGACGCTTGTCGGCCTGCGCGACGGCAAGGGCGAAATCGACGATATCG ACAATCTTGGTAACCGCCGCGTGCGCTCTGTCGGCGAGCTGATGGAAAATCAGTATCGCGTTGGCCTGCTGCGCATGGAA CGGGCGATCAAGGAGCGCATGTCGTCGGTCGATATCGACACGGTCATGCCGCACGATCTGATCAACGCCAAGCCGGCAGC GGCCGCGGTGCGTGAATTCTTCGGCTCCTCGCAGCTGTCGCAGTTCATGGACCAGACGAATCCGCTTTCGGAGATCACTC ACAAGCGCCGCCTCTCGGCGCTTGGGCCTGGCGGTCTCACGCGCGAGCGTGCGGGCTTTGAGGTGCGCGACGTGCATCCG ACGCATTATGGCCGCATCTGCCCGATCGAAACGCCGGAAGGTCCGAACATCGGTCTTATCAACTCGCTGGCGACTTTCGC GCGCGTCAACAAGTACGGCTTCATCGAAAGCCCGTACCGGCGTGTGAAGGGCGGCAAGCTGGCCGACGACATCGTCTACC TCTCGGCGATGGAAGAAAGCCGCTATCGCATCGCACAGGCGAATGTGGCGATCGGCAAGAAGGGCGAGATCGAAGGCGAG CTCGTCAATTGCCGTATCGATGGCGATTTCGAGATGGTGCCGCCGGACCAGGTGGACTTCGTCGACGTGTCGCCGAAGCA GATCGTCTCCGTGGCAGCGGCGCTCATCCCGTTCCTCGAGAACGACGACGCGAACCGCGCTCTCATGGGCTCGAACATGC AGCGTCAGGCCGTGCCGCTCATCCGTTCCGAGGCGCCGCTTGTCGGCACTGGCATGGAAGAAGTGGTGGCGCGCGACTCG GGTGCCGCCATCGGCGCACGCCGCACCGGCGTCGTCGACCAGGTGGATGCAACGCGTATCGTTATCCGTGCGACGGAGGA AGTCGATTCCTCCAAGTCGGGCGTGGACATCTACAACCTGCGGAAGTTCCAGCGCTCCAACCAGAACACCTGCATCAACC AGCGTCCGCTGGTGCGTGTAGGCGATCAGGTAAAGAAGGGCGACATCATTGCGGATGGTCCGTCGACCGAGCTCGGCGAT CTGGCGCTCGGCCGCAACGTGCTCGTCGCCTTCATGCCCTGGAACGGCTATAACTTCGAGGACTCCATCCTCATCTCCGA GCGTATCGTTCGCGACGACGTGTTCACGTCCATCCACATCGAAGAGTTCGAAGTGATGGCGCGCGACACGAAGCTCGGGC CGGAGGAAATCACGCGCGACATTCCGAACGTCGGTGAAGAAGCGCTGAAGAACCTCGACGAAGCAGGCATCGTCTATATC GGCGCGGAAGTGAACCCCGGCGATATTCTCTGCGGCAAGATTACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAAAA GCTTCTGCGCGCCATCTTCGGTGAAAAGGCGTCCGATGTGCGCGACACATCGCTCCGCTTGCCGCCGGGCGTTCAGGGCA CGGTTGTCGAAGTGCGTGTGTTCAACCGTCATGGTATCGACAAGGACGAACGCGCGATGGCGATCGAGCGCGAGGAAATC GAACGTCTCGCGAAGGACCGCGACGACGAATTCGGTATTCTCGATCGCAACGTCTATGGCCGCCTCTCCGAAATCCTGCT CGGCAAGCAGATCGCTTCGGGCCCCAAGGGCATGGAAGCGGATGCCAAGGTAACGCAGGCAAATCTTGACGATCTCAGCC ACGGTCAGTGGTGGCAGATCGCTCTCAAGAACGAGAAGGCTCAGAGCGAAATCGAAGCGCTGAAGAAGCAGTACGACGAA AGCAAGGAGCGTCTCGAAGCGCGCTTTGCCGACAAGGTCGACAAGCTGCAGCGCGGCGACGAGCTGCCGCCTGGCGTCAT GAAGATGGTGAAGGTTTTCGTTGCCGTGAAGCGCAAGCTGCAGACCGGCGACAAGATGGCCGGCCGTCATGGCAACAAGG GCGTGATCAGCCGTATTGTTCCGATGGAAGACATGCCCTATCTCGATGATGGTCAGCCTGTCGACATTGTGCTCAATCCG CTTGGTGTGCCGAGCCGCATGAATGTCGGCCAGATTCTGGAAACCCATCTCGGGTGGGCGTGTGCGGGCCTCGGCAAGAA GATCGAAGTCGCGCTTGATGCCTATCACCGCGAGAACAAACCGAAAGAGCTGAAGGATCTCGTCAAGCAGATCTACGGCG ACGATCCGACGGTGGCTTCGCTCGATGAGGAACAGCTTGTCGAGATGGCGGGCAACCTGACAAACGGTGTGCCGATCGCA ACGCCCGTTTTCGACGGTGCGCGCGAGCCTGAAATCGTCGAGATGCTGGAACTGGCGGGTCTCGATCGCTCGGGACAGGT CACGCTTCACGACGGACGCACGGGTGAACCTTTCGACCGCAAGGTCACGGTGGGCTACATCTATATGCTCAAGCTTCACC ATCTTGTGGACGACAAGATCCACGCGCGTTCCATCGGACCGTACTCGCTCGTTACCCAGCAGCCGTTGGGAGGCAAGGCT CAGTTCGGCGGTCAGCGCTTCGGTGAAATGGAAGTGTGGGCGCTCGAAGCCTATGGCGCCGCCTACACGCTGCAGGAAAT GCTGACAGTGAAGTCGGACGACGTGGCTGGCCGTACAAAGGTCTATGAGGCCATCGTGCGTGGCGACGATACGTTCGAGG CCGGTATCCCAGAGAGCTTCAATGTGCTCGTGAAGGAAATGCGATCGCTCGGCCTCAACGTTGAGCTGCTCACGCCGGCA GCGAACTGA Protein sequence : MTQSFTGRKRVRKVFGHIPQIAEMPNLIEVQKYSYDQFLQVDEPTGGREEQGLQAVFKSVFPISDFSESSTLEFVNYEFE TPKYDVEECQQRGMTFAAPLKVTLRLIVFEVDEDTGAKSVKDIKEQDVYMGDMPLMTENGTFVINGTERVIVSQMHRSPG VFFDHDKGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIVFVRIDRRRKLPVTTLLYALGLDSEEILSTFYNSVTFTKVK QGWRVPFNADRYRGAKPERDLIDAKTGKVVVEAGRKVTPRLAKKLAEEGLKELLVQDEDIHTRYLAQEIVNMETGEIFAE AGDEITPELLEALVEAGHTDIITLDIDHVNTGAFIRNTLAVDKCTNREQALIDIYRVMRPGEPPTADTAEALFKSLFFDA ERYDLSAVGRVKMNMRLDLDVSDTVRVLRKEDILAVIKTLVGLRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRME RAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHP THYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRRVKGGKLADDIVYLSAMEESRYRIAQANVAIGKKGEIEGE LVNCRIDGDFEMVPPDQVDFVDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGMEEVVARDS GAAIGARRTGVVDQVDATRIVIRATEEVDSSKSGVDIYNLRKFQRSNQNTCINQRPLVRVGDQVKKGDIIADGPSTELGD LALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALKNLDEAGIVYI GAEVNPGDILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVQGTVVEVRVFNRHGIDKDERAMAIEREEI ERLAKDRDDEFGILDRNVYGRLSEILLGKQIASGPKGMEADAKVTQANLDDLSHGQWWQIALKNEKAQSEIEALKKQYDE SKERLEARFADKVDKLQRGDELPPGVMKMVKVFVAVKRKLQTGDKMAGRHGNKGVISRIVPMEDMPYLDDGQPVDIVLNP LGVPSRMNVGQILETHLGWACAGLGKKIEVALDAYHRENKPKELKDLVKQIYGDDPTVASLDEEQLVEMAGNLTNGVPIA TPVFDGAREPEIVEMLELAGLDRSGQVTLHDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKA QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELLTPA AN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 60 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 59 |
| Plav_2729 | YP_001413994.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
