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Name : secD (ESA_02894) Accession : YP_001438959.1 Strain : Cronobacter sakazakii ATCC BAA-894 Genome accession: NC_009778 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2845925 - 2847739 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGGTCGCCGTGCTTATCGTCGGCCTGCTTTATGCACTTCCCAACCTGTATGGTGAGGATCCGGCTGTTCAAATCAC TGGCGCGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAATACGTTACAAAAAGAAAAAATTTCCGCGA AATCTGTGGCTCTGGAAGAGGGCGCAATTCTTGCGCGCTTTGACTCCACCGATACTCAGCTGCGCGCTCGTGAAGCGCTG ATGAGCACGATGGGCGATCAATTCGTCGTCGCGCTTAACCTCGCGCCTGCCACCCCACGCTGGCTTACCGCTATTTCCGC CGAACCGATGAAACTGGGTCTCGACCTGCGCGGCGGCGTTCACTTTCTGATGGAAGTGGATATGGACACCGCGCTTGGCA AGCTCCAGGAACAGAATATGGACAGCCTGCGCAGCGATCTGCGCGAGAAAGGGCTGAGCTGGACGAACGTGCGTAAAGCC GATAACTACGGCGTGACGATTCAGTTCCGTGACAGCGATATCCGTGACGCCGCGGTCTCTTACCTGACGAGCCGCCACCG CGACATGGTTATCTCAAGCCAGGGCGATAACAGCCTGCGCGCGGTGATGTCTGATGAGCGTCTGCGCGAAGCGCGTGAAT ACGCTGTTCAGCAGAACATTAACATCCTGCGTAACCGCGTGAACCAGCTGGGCGTAGCCGAGCCGCTGGTGCAGCGTCAG GGCGCTGACCGCATCGTGGTTGAGCTGCCGGGTATTCAGGATACCGCTCGCGCGAAAGAAATCCTCGGCGCGACCGCGAC GCTGGAATTCCGTCTGGTTAACAGCTCTGTTGACCGTTCTGCCGCCGCGGCAGGCCGTGTTCCAGGCGATTCTGAAGTGA AGATGACCCGTGAAGGCCAGCCGGTTGTGCTGTACAAACGCGTTATCCTGACCGGTGACCATATTACCGATTCCACCTCC GGCGTTGACCAGTACAACATGCCGCAGGTGAATATTTCGCTCGACAGTGCGGGCGGTAATATCATGTCCAATTTCACCAA AGACAACATCCATAAACCGATGGCGACGCTCTTTGTGGAATATAAGGACAGCGGTAAGAAAGACGCCAACGGCCGCAGCA TCCTGGTAAAACAGGAAGAAGTGATCAACGTTGCGACGATTCAGGCGCGTCTGGGTCAGAACTTCGTGATTACCGGCATC GACAACCCGAACGAAGCGCGTCAGCTTTCGCTGCTGCTGCGTGCGGGCGCGCTGATTGCGCCGATTCAGATTGTGGAAGA GCGCACCATTGGCCCGACGCTGGGTATGCAGAACATCACTCAGGGTCTGGAAGCATGTCTGGCGGGCCTCGCGGTCTCCA TTCTGTTCATGATTCTGTTCTATAAGAAGTTCGGTCTTATCGCCACCACGGCGCTGCTGGCAAACCTGGTGCTGATCGTC GGCATTATGTCGCTGCTGCCGGGCGCGACGCTCACCATGCCGGGTATCGCGGGGATTGTGTTAACCCTTGCGGTCGCGGT GGATGCGAACGTGCTGATAAACGAGCGTATTAAAGAAGAGCTCAGCAACGGCCGTTCGGTGCAGCAGGCGATTGACGAAG GTTATCGTGGGGCGTTTAGCTCGATTTTCGATGCCAACGTCACGACGCTGATTAAGGTCATCATCCTGTACGCAGTGGGG ACCGGCGCGATTAAAGGGTTTGCTATCACGACCGGTATCGGCGTGGCGACCTCCATGTTCACCGCTATTGTCGGTACCCG TGCCATTGTGAACCTGTTGTACGGCGGCAAACGCATCAACAAGCTGTCTATCTGA Protein sequence : MLVAVLIVGLLYALPNLYGEDPAVQITGARGVAASEQTLIQVQNTLQKEKISAKSVALEEGAILARFDSTDTQLRAREAL MSTMGDQFVVALNLAPATPRWLTAISAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDSLRSDLREKGLSWTNVRKA DNYGVTIQFRDSDIRDAAVSYLTSRHRDMVISSQGDNSLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNSSVDRSAAAAGRVPGDSEVKMTREGQPVVLYKRVILTGDHITDSTS GVDQYNMPQVNISLDSAGGNIMSNFTKDNIHKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQARLGQNFVITGI DNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYKKFGLIATTALLANLVLIV GIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-112 | 46 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-112 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-112 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-112 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-112 | 46 |
