Gene Information

Name : Ssed_R0050 (Ssed_R0050)
Accession : -
Strain : Shewanella sediminis HAW-EB3
Genome accession: NC_009831
Putative virulence/resistance : Unknown
Product : 16S ribosomal RNA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2146027 - 2147561 bp
Length : 1535 bp
Strand : +
Note : -

DNA sequence : 
AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGGAGATAGCTTGCT
ATCAGACGTCGAGCGGCGGACGGGTGAGTAATGCCTAGATATCTGCCTAGTCGTGGGGGATAACAGTTGGAAACGACTGC
TAATACCGCATACGCCCTACGGGGGAAAGGAGGGGACCTTCGGGCCTTTCGCGATTAGATGAGTCTAGGTGGGATTAGCT
AGTAGGTGAGGTAATGGCTCACCTAGGCGACGATCCCTAGCTGTTCTGAGAGGATGATCAGCCACACTGGGACTGAGACA
CGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCCATGCCGCGTGTGT
GAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGCGAGGAGGAAAGGTTGGCAGTTAATAACTGTCAGCTGTGACGTTACT
CGCAGAAGAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTAATCGGAATTACTGGGC
GTAAAGCGTACGCAGGCGGTTTGTTAAGCCAGATGTGAAAGCCCCGGGCTCAACCTGGGAATTGCATTTGGAACTGGCAA
ACTAGAGTCTTGTAGAGGGGGGTAGAATTTCAGGTGTAGCGGTGAAATGCGTAGAGATCTGAAGGAATACCGGTGGCGAA
GGCGGCCCCCTGGACAAAGACTGACGCTCATGTACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG
CCGTAAACGATGTCTACTCGGAGTTTGGTAACTTAGTTACTGGGCTCCCAAGCTAACGCATTAAGTAGACCGCCTGGGGA
GTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAA
CGCGAAGAACCTTACCTACTCTTGACATCCAGAGAATTCGCTAGAGATAGCTTAGTGCCTTCGGGAGCTCTGAGACAGGT
GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTATTTGCC
AGCACGTAATGGTGGGAACTTTAGGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGGC
CCTTACGAGTAGGGCTACACACGTGCTACAATGGTCGGTACAGAGGGTTGCAAAGCCGCGAGGTGGAGCTAATCCCACAA
AGCCGGTCGTAGTCCGGATCGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCTA
CGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGCTGCACCAGAAGTAGATAGCTTAAC
CTTTCGGGGAGGGCGTTTACCACGGTGTGGTTCATGACTGGGGTGAAGTCGTAACAAGGTAGCCCTAGGGGAACCTGGGG
CTGGATCACCTCCTT

Protein sequence : 
-

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
FTT_r07 - 16S ribosomal RNA Not tested FPI DNA e-148 88.8
FTT_r10 - 16S ribosomal RNA Not tested FPI DNA e-148 88.8
FTM_1085 - 16S ribosomal RNA Not tested FPI DNA e-232 88.3
FTM_1695 - 16S ribosomal RNA Not tested FPI DNA e-232 88.3
FTW_2069 - 16S ribosomal RNA Not tested FPI DNA e-245 88.1
FTW_2070 - 16S ribosomal RNA Not tested FPI DNA e-232 88.1