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Name : secD (Ssed_2890) Accession : YP_001474625.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3493497 - 3495347 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATATCCAATGTGGAAAAACCTGATGGTGATAATCATTATCGCCGTTGGTTCTTTCTATGCAATTCCAAA CCTCTTCGGGGAAGACTATGCGGTTCAGGTAGTGGCTTCTCGTGGTGCAGAGGTTACGGCAACGACACAGTCGACCGTAA ATGATGTTCTTGCAAGTAAGAACATTACAGTAAAGCGTTCAGAGCTTGAAAATGGTCAACTATTGGTTCGTGTGGCTAAT GGCGATCAGCAACTGTTAGCTAAAGAAGCGATTGCAGAGTCACTAGGTGATAAATACATCGTCGCCTTAAACTTAGCTCC GGCGACACCTGACTGGCTTGAGTCATTGGGTGGAAGCCCAATGAAACTGGGTCTCGATCTTCGTGGTGGTGTGCACTTCC TGATGGAAGTGGATATGGGTGAAGCCGTTCGTAAGATGACAGAAGCTAAAATTTCTGACTTCAGAACCGATCTTCGTGGC GAGAAAATTCGTTATGCCGGTATTCGTAACAGTGCTAAAGGCATTGAGATTAAGTTCCGTGATGCTGAGAATCTAGCGAA GGCTGAACGTTTCCTCAAGACTCGTGGCAACGATATGGTGTTTACCGATATCTCTTCGGGCGACAGCTATTTCTTAATGG CTAACTTGAGCGAAGCTTATCTTAAGCAGATCAAAGAGGAAGCACTACAGCAGAACATCACAACGATCCGTAATCGTGTG AACGAGCTGGGTGTGGCAGAACCTGTTGTACAGCGTCAAGGTGCAGAGCGTATTATCGTCGAGCTTCCTGGTGTTCAGGA TACGGCACGTGCAAAAGATATCTTAGGCGCAACGGCCTCTATTGAATTCCACATGGTGGATGAAAAAGCCGACGCGGCTG CCGCTGCAAGTGGTAGAGTCTCGCCAAGTTCTCAAGTATACAATCGCCGTCAGGGCGGACAAGTTGTACTGCATAAGGCT GTAATGTTGACCGGTGATCATATTCAAGGTGCTCAACCGAGCTTCGATGAATACAGTCGTCCACAGGTGAGCATTAACCT TGATTCAAAAGGTGGGTCTATCTTCTCGAATGTAACTAAGGATAACATCGGTAAGCCGATGGCAACCTTGTTCATCGAGT ATAAAGACAACGGTGATAAGAATCCTGATGGTAGTGTGAAGATGCAAAAGATCGAGGAAGTTATCTCGGTTGCAACGATT CAAGCCCGTCTTGGTCGTAACTTCGTGATCACTGGCCTTGAGCACTCAGAAGCGCAAAACTTAGCCCTTCTACTTCGTGC GGGTGCCTTGATTGCACCTGTGACTATCGTAGAAGAGCGTACCATTGGTCCAAGCCTTGGTGCTGAAAACATCCAAAATG GTGTTCAAGCGATGATCTGGGGTATGGCTGTTGTACTTATTTTTATGCTGGTTTATTACCGTGGTTTCGGCCTAATTGCC AACTTAGCGTTGACGGCGAACCTTGTGATGGTTGTTGGTGTTATGTCGATGATCCCAGGTGCCGTACTTACGCTTCCAGG TATTGCGGGCATGGTACTGACTGTCGGTATGGCGGTTGATGGTAACGTGCTTATTTACGAGCGTATTCGTGAAGAGTTAC GCAACGGCCGCAGCGTACAGCAAGCGATTCATGAAGGTTACGGTAACGCATTTTCAACTATTGCCGATGCGAACATCACT ACATTTATGACTGCACTTATCCTGTTTGCTGTAGGTACGGGTGCTGTTAAAGGGTTTGCAGTAACGCTTATGATCGGTAT CGCAACCTCTATGTTTACTGCAATCGTGGGTACTCGCTCAATAGTTAACGCTATGTGGGGTGGTAAACGCGTGAAGAAAC TGTCTATATAA Protein sequence : MLNKYPMWKNLMVIIIIAVGSFYAIPNLFGEDYAVQVVASRGAEVTATTQSTVNDVLASKNITVKRSELENGQLLVRVAN GDQQLLAKEAIAESLGDKYIVALNLAPATPDWLESLGGSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKISDFRTDLRG EKIRYAGIRNSAKGIEIKFRDAENLAKAERFLKTRGNDMVFTDISSGDSYFLMANLSEAYLKQIKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAAASGRVSPSSQVYNRRQGGQVVLHKA VMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGDKNPDGSVKMQKIEEVISVATI QARLGRNFVITGLEHSEAQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGVQAMIWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAMWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-123 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-122 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-122 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-122 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-122 | 47 |
