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Name : secD (Ssed_3400) Accession : YP_001475132.1 Strain : Shewanella sediminis HAW-EB3 Genome accession: NC_009831 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 4143230 - 4145044 bp Length : 1815 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAGAAAACGTAGCAATAACAAAGTATTAAATCATTATTCAGTGTGGAAGTATGTTGTGCTGGTGATAACTTTCATCAT CATGCTTTTCAGTGCCTTACCAACCTTGTATGGAGAAGATGCGGCTATTCAAATTGGTGCCAAAGCTGGCTTAAATCTAA CACCACAGGCCCTCAATAGAGTATTGACGGATGAGGGGATTCAAGTGAAAAGAATCACCCAGGCTGAAGGTGAAACGGTT GTCGTACTCGAGCAAGAAACTCAGCAGAGCCAGGCCAAAGCGCTCTTAAATAATGCCGTTGAGGATGATTCACAGCTGAC ACTTTCCTTGGCTCCTGCGGCACCCGACTGGCTACTCTCCATGGGTTTTACACCGATAAAACTTGGGCTTGACCTTCGTG GTGGAGTGCAGTTTTTGTTGGATGTTGAGGTTGAACCTGTATACCAGCTACATTATGACGCCTTCGTAGATTCAGTCAGA CAGTTTACCCGCATGCAGGGGCTAAACGGTGTCAGTGTCCGCCTGGACAGCGAGGCGGGAGTTGTCATCACTATGCCGGA TACCAGCCACAGAGGAGATATTAGGCAGTTCATTAAAACTAATTATCCGATTTGGCAGGTAACGAACTTAGAAAACCGTT CTCTGAAGGCTGATTTTAAGCCGGACGAGAAGGTTAAAATTCGCGATCTCACCGTAAAACAGAACTTGCAGATCATGCGC AGCCGAATCGAGCAGCTGGGGATCACCGAAGCCTTAGTTCAGCGCCAGGGGGAACACAGGATCAGAATCGAACTGCCTGG TGTTCAGGATCCGGCAGCGGCAAAGAGTGTTATTGGCGCGACGGCGAGCCTGGCTTTTTATGAAGTGAAAGATGCCGGGT CGGTAAACGCTAAAATCTTAAAGGATAAATCAGAACTTCCTGTCTATGTGGCCAGAAAGCCGGTACTCGGTGGGGAGCAT ATTGTCGATGCCAGGGCGAGTCTGGGAGAGATGGGGATGCCTGAGGTGGTGATCCATCTGGATCGAGCCGGTGGAAAAGT GATGTCCGACTTCTCTCGTGACAATATCGGTAAGCCGATGGCGACATCCTATAGCGAATACAGCCGTGATGAGCAAGGCA AGGTGACTCAAAGTACAGAGGTTATCAGCGTTGCGACGATTCAATCTCAACTTGGTGATCGCTTTAGCATCACCGGGGCA GGCGATTATTCACAGGCGCAGCAGTTAGCGTTATTACTTCGGGCCGGCTCTATGACTGCTCCGGTTACCATAGTAGAGGA ACGCACCATTGGGCCGAGCCTCGGCGCGGAAAATATCACCAATGGGTTTTCCGCCTTGGGGCTGGGAATGGCGATGACCT TACTCTTTATGGGACTCTGGTATCGCCGCTTAGGTTGGGTTGCCAATGTGGCTCTGATTGCCAATATGGTGATTTTATTT GGCCTGCTGGCATTAATTCCCGGCGCCGTGTTAACCCTACCGGGTATCGCTGGTTTAGTGTTAACCGTGGGAATGGCGGT CGATACCAATGTACTTATCTTCGAGCGAATAAAGGATAAATTAAAGGAGGGAAGAGGCTTTGCTCACGCAATCGACCGAG GTTTTGATAGCGCAATTTCGACGATTTTTGATGCTAATTTTACCACTATGATCACCGCCGTGGTGCTCTACTCCATCGGT AACGGACCCATTCAAGGCTTTGCCTTAACCTTAGGGCTTGGGCTACTCACCAGCATGTTCACAGGCATTTTCGCTTCTCG AGCATTAATTAATTGGGTATATGGACGTGACTTTAGCCGCGATGTGAAGGTGTAA Protein sequence : MRKRSNNKVLNHYSVWKYVVLVITFIIMLFSALPTLYGEDAAIQIGAKAGLNLTPQALNRVLTDEGIQVKRITQAEGETV VVLEQETQQSQAKALLNNAVEDDSQLTLSLAPAAPDWLLSMGFTPIKLGLDLRGGVQFLLDVEVEPVYQLHYDAFVDSVR QFTRMQGLNGVSVRLDSEAGVVITMPDTSHRGDIRQFIKTNYPIWQVTNLENRSLKADFKPDEKVKIRDLTVKQNLQIMR SRIEQLGITEALVQRQGEHRIRIELPGVQDPAAAKSVIGATASLAFYEVKDAGSVNAKILKDKSELPVYVARKPVLGGEH IVDARASLGEMGMPEVVIHLDRAGGKVMSDFSRDNIGKPMATSYSEYSRDEQGKVTQSTEVISVATIQSQLGDRFSITGA GDYSQAQQLALLLRAGSMTAPVTIVEERTIGPSLGAENITNGFSALGLGMAMTLLFMGLWYRRLGWVANVALIANMVILF GLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRGFAHAIDRGFDSAISTIFDANFTTMITAVVLYSIG NGPIQGFALTLGLGLLTSMFTGIFASRALINWVYGRDFSRDVKV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-93 | 41 |
