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Name : iroC (APECO1_O1CoBM140) Accession : YP_001481296.1 Strain : Genome accession: NC_009837 Putative virulence/resistance : Virulence Product : IroC Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : - Position : 118171 - 121956 bp Length : 3786 bp Strand : - Note : salmochelin siderophore system, ATP-binding cassette; similar to AAP41471; identified by match to protein family HMM PF00005 DNA sequence : ATGATAATCATATGCCAGCACCCATCCAGGAGTCATGCATCCATAACAATGCGGGACCGGAGCGTGCTGGCTTTTTTGCG GAACGATCCGGCCAGTGGATCGTATTTTACAGACGGAGGAGGCTTAATGCCTGCGAATCACACTCCCACACCGGCTCAGT CATGGATAGTTCGCCTAGCGCGCGTGTGCTGGGAACGTAAGAAACTTAGTGTCATCGTGGTGGTAGCGTCAGTATCGACT ATTTTGCTGGCTGCGCTGACGCCACTGCTGACAAGACAGGCTGTGAATGACGCACTGGCGGGCAATCCGGCCCGCCTGCC GTGGCTGGCCTGCGGGTTACTGTTGATCGCTTTTTTTGATTTCATCGGTAACTATGTGCGCCGTGGTTATGCCGGGATGC TCTCACTCTGGGTGCAGCATACCCTCAGAGGACGGGTATTCGACAGTATTCAGAAACTTGACGGCGCAGGCCAGGATGCG CTGCGCACCGGGCAGGTGATTTCACGGACCAACAGCGATCTGCAGCAGGTGCATACCCTGCTGCAGATGTGCCCGGTGCC GCTGGCAGTGTTCACTTATTACATTGCCGGCATTGCCGTGATGCTGTGGATGTCCCCTGCCATGACGCTTATCGTCGTGT GCGTACTGGTATGCCTGGCGATCACCGCGCTTCGTGCGCGTCGTAGGGTCTTCGCGCAAACCGGGCTGGCCTCGGACCAA CTGGCGAATCTCACCGAACATATACGCGAGGTGCTGGCACAGATCTCAGTGGTAAAATCCTGTGTGGCAGAGATGCGTGA AACGCACTGGCTCGATAGGCAGTCGCGGCAGATTGTGCGTGTACGCATCGGTGCGGTTATCTCGCAGGCGATGCCTGGGG CCACCATGCTGGCGCTACCGGTGCTCGGGCAAATCGTCCTGCTGTGCTACGGCGGGTGGTCGGTCATGCACGGGCGGATC GATCTCGGTACCTTCGTTGCATTCGCCAGCTTCCTCGCGATGCTGACCGGGCCAACCCGCGTACTGGCATCGTTTCTGGT TATCGCACAGCGCACTCAGGCGTCCGTGGAGCGGGTGTTTGCACTGATCGACACCCGTTCACAGATGGAGGACGGGACGG AGTCGATTAACAGTCAGGTTGTCGGACTGGAACTGGAGAATATGAGCTTTGACTACCACCATGGCGACAGACATATCCTC AGCAATATCTCCTTTTCCCTGCGCGCCGGTGAAACCGTGGCGGTGGTGGGCGCATCGGGTTCAGGAAAATCGACCCTGTT GATGCTGCTGGCGCGTTTTTATGATCCCTGCTCCGGAAAGATATGGCTCAACACCAGCGAAGGCCGACAAAATCTTCGCG ATATCAGACTGGAGGCGCTTCGTCGCCGGGTAGGCATCGTATTTGAAGATGCTTTTCTGTTTGCCGGTACGGTGGCGGAA AATATCGCCTATGGCCACCCTCAGGCAACGGCGGACGACATTCGCCGTGCGGCAGCTGCTGCAGGAGCCAGCGATTTTAT CAACGCCCTGCCGAAAGGCTTCGATAGCCTGTTAACCGAACGGGGTACGAATCTTTCCGGCGGGCAGAGGCAGCGAATAG CGCTGGCGCGGGCGCTCATTACTGCACCGGACGTGTTAATCCTGGATGATACCACCTCAGCGGTTGATGCTGTTACGGAA GCGGAGATTAATACCGCGCTGGGTCGCTATGCTGACGAAGGGCATATGCTGCTGGTGATTGCCCGACGGCGTTCAACACT TCAGCTAGCCAGCCGGGTTGTGGTGCTGGATAAGGGCCGTATGGTGGATACCGGAACCCCGGCAGAACTTGAAGCGCGCT GTCCGGCGTTCCGCGCACTGATGACCGGCGACAGCGATTTTCTGGCCACGTCCCACAATAGCCACAACGAATTGTGGCCG GCTGAACCAGCGACACAAGACGATGTAACGGATACGGGGGATAAAGGTTTTGTCGCCCGTATGACCCGCGTACCGGAAAA TGCAGTACAGCAGGCGCTGGCCGGTAAAGGTCGCAAAGTCACGTCACTACTGAAGCCTGTGGCGTGGATGTTCGTCATCG CCGCTCTGCTGATCGCACTCGATTCTGCGGCAGGCGTAGGGGTACTGATACTGTTGCAGCACGGCATTGACTCCGGTGTC GCCACAGGCGATATGTCGATCATCGGCCTCTGTGCCCTGCTCGCCCTGTGCCTAGTCATTGTGGGCTGGTGCAGTTATTC TCTGCAGACGGTCTTCGCCGCCAGAGCGGCGGAATCAGTTCAGCATTCGGTGCGCTTGCGCAGCTTCGGCCATATGCTGC GTCTTGGACTCCCCTGGCATGAAAAGCATGCCGATTCGCGTCTTACCCGCATGACCGTTGATGTGGACTCTCTCGCCCGC TTTCTGCAAAACGGCCTTGCCGGTGCGGCCACCAGTCTGGTGACGATGTTCGCAATCGCCGCCACCATGTTCTGGCTCGA CCCGTTCCTGGCGCTGACGGCATTAAGCGCAGTGCCAGTGGCCGCACTGGCAACCATGATTTATCGCCGCCTCAGTACCC CTGCTTATGCACAGGCACGGCTGGAAATAGGCAAAGTCAACAGCACCCTGCAGGAAAAAGTCTCTGGCCTGCGTGTCGTG CAATCGCATGGTCAGCAGGAACTGGAGGGCGCCCGGCTGCGCGCGTTATCGGAGCGTTTCCGCGCAACCCGTGTGCGAGC ACAAAAATACCTTGCAGTCTATTTTCCGTTCCTGACATTCTGCACCGAGGCCTCCTATGCCGCTGTTCTGTTAGTGGGAG CTTCGCAGGTCGCCGCTGGAGAAATGACTGCCGGGGTACTGGCGGCTTTCTTCCTGTTGCTGGGGCAATTCTATGGGCCA GTGCAGCAGTTATCAGGGATTGTCGACGCCTGGCAGCAGGCGACAGCCAGCGGCAAACATATTGATGAACTACTGGCGAC AGAAGGCACTGAGCACCTCGGGTCCTCTTCGGTCCTCCCTGTCACCGGTGCACTGCATCTTGATGAGGTCACGTTCAGTT ATCCCGACAGTCACGAGCCAGCTCTGAACAAACTTACCCTGACGATCCCAGAGGGAATGGTTGTCGCGGTCGTCGGTCGC AGCGGTGCGGGTAAGTCGACGCTGATTAAGCTGATTGCCGGGTTGTATTTCCCCACGCACGGCAACATCAGAATCGGTGT GCAAATGCTCGATGATGCCTCGCTCACTGAGTATCGTCGCCAGATTGGGCTTGTCGATCAGGATGTAGCACTGTTTAGTA GTGATATTGCAGAAAACATTCGTTATTCACGGCCATCCGCCACCAATGAAGACGTTGAAATTGCCTCACAGCGGGCAGGG CTGTATGAGATGGTGTGCAATCTGCCGCAGGGATTCCGGACACCGGTGAATAACGGCGGAGCCGATCTGCCCGCAGGTCA GCGCCAGTTGATTGCGCTGGCCCGCGCGCAACTGGCGAATGCCCACATCCTGCTGCTCGACGAAGCCACGTCATGTCTGG ATCGCACATCCGAAGAACGACTGATGTCATCGTTAACAGATGTCGTGCATGCCGGGAAGCACTCGGCGCTGATTGTTGCA CATCGTCTGACCACCGCGCAACGCTGCGATCTGATTGCCGTTATTGATAAGGGGTTACTTGCGGAATACGGAACCCACGA ACAGCTGTTATCTGCGGGCGGCCTCTATACCCGCTTATGGCATGACAGCGTCAGCAGTACTGCGCTCCATCGCCAGCACA ACATGAAGGAGGAAACCCCGGGATAG Protein sequence : MIIICQHPSRSHASITMRDRSVLAFLRNDPASGSYFTDGGGLMPANHTPTPAQSWIVRLARVCWERKKLSVIVVVASVST ILLAALTPLLTRQAVNDALAGNPARLPWLACGLLLIAFFDFIGNYVRRGYAGMLSLWVQHTLRGRVFDSIQKLDGAGQDA LRTGQVISRTNSDLQQVHTLLQMCPVPLAVFTYYIAGIAVMLWMSPAMTLIVVCVLVCLAITALRARRRVFAQTGLASDQ LANLTEHIREVLAQISVVKSCVAEMRETHWLDRQSRQIVRVRIGAVISQAMPGATMLALPVLGQIVLLCYGGWSVMHGRI DLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSQMEDGTESINSQVVGLELENMSFDYHHGDRHIL SNISFSLRAGETVAVVGASGSGKSTLLMLLARFYDPCSGKIWLNTSEGRQNLRDIRLEALRRRVGIVFEDAFLFAGTVAE NIAYGHPQATADDIRRAAAAAGASDFINALPKGFDSLLTERGTNLSGGQRQRIALARALITAPDVLILDDTTSAVDAVTE AEINTALGRYADEGHMLLVIARRRSTLQLASRVVVLDKGRMVDTGTPAELEARCPAFRALMTGDSDFLATSHNSHNELWP AEPATQDDVTDTGDKGFVARMTRVPENAVQQALAGKGRKVTSLLKPVAWMFVIAALLIALDSAAGVGVLILLQHGIDSGV ATGDMSIIGLCALLALCLVIVGWCSYSLQTVFAARAAESVQHSVRLRSFGHMLRLGLPWHEKHADSRLTRMTVDVDSLAR FLQNGLAGAATSLVTMFAIAATMFWLDPFLALTALSAVPVAALATMIYRRLSTPAYAQARLEIGKVNSTLQEKVSGLRVV QSHGQQELEGARLRALSERFRATRVRAQKYLAVYFPFLTFCTEASYAAVLLVGASQVAAGEMTAGVLAAFFLLLGQFYGP VQQLSGIVDAWQQATASGKHIDELLATEGTEHLGSSSVLPVTGALHLDEVTFSYPDSHEPALNKLTLTIPEGMVVAVVGR SGAGKSTLIKLIAGLYFPTHGNIRIGVQMLDDASLTEYRRQIGLVDQDVALFSSDIAENIRYSRPSATNEDVEIASQRAG LYEMVCNLPQGFRTPVNNGGADLPAGQRQLIALARAQLANAHILLLDEATSCLDRTSEERLMSSLTDVVHAGKHSALIVA HRLTTAQRCDLIAVIDKGLLAEYGTHEQLLSAGGLYTRLWHDSVSSTALHRQHNMKEETPG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| iroC | CAC43427.2 | ABC transport protein | Virulence | PAI III 536 | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| iroC | YP_001481296.1 | IroC | VFG1653 | Protein | 0.0 | 99 |
