|
Name : secD (Spea_1472) Accession : YP_001501332.1 Strain : Shewanella pealeana ATCC 700345 Genome accession: NC_009901 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1794684 - 1796516 bp Length : 1833 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTGGAAAAACCTAATGGTGATAATCATTATCTCCATAGGTGCATTCTATGCGATACCAAACCTTTTCGGTGAAGACCA CGCAGTTCAAGTGGTAGCCACACGAGGAGCAGAGGTCTCAGCGTCGACAATGTCGACAGTAAATGAAGTATTAAAGAGCA AAGGAATCGCTGTTAAGCGTTCTGAGCTTGAAAATGGTCAGTTGTTAGTACGTGTAAATAATGGTGAAGAGCAATTACTT GCTAAAGAAGCGATTAGCGATGCGTTAGGCGACAAGTACACCGTAGCACTAAACTTAGCTCCAGCGACTCCAGAGTGGCT TGAGGCCATGGGCGGTTCGCCGATGAAACTAGGTTTGGACTTACGTGGTGGTGTTCACTTCTTAATGGAAGTGGATATGG GCGAAGCGATTCGTAAGATGACCGAAGCCAAGGTTGCAGACTTCAGAACTGATTTACGAGCTGAGAAAATTCGCTACGCG GGTATTCGTAATGGCGCCAAAGGCATCGAGATTAAGTTTCGCGATGCCGAGACTTTAACGAAAGCTGAAAACTTTCTTAA GTCTCGCAGCAATGACATGGTCTTCCAAGACAAGACTGTTGGCGATGACTATGTCCTTGTTGCTAATCCAAGTGAAGCTT ATTTAAAGCAGATTAAAGAGGAAGCACTACAGCAAAACATCACTACACTACGTAACCGTGTAAACGAGCTAGGTGTGGCT GAACCTGTTGTGCAACGTCAAGGTGCTGAACGTATTATCGTTGAGCTACCAGGTGTTCAAGATACTGCTCGCGCGAAAGA AATTTTGAGTGCGACAGCATCGATTGAATTCCATATGGTTGACGAGAAAGCCGATGTTCAAGCTGCAATGAGTGGCCGTG TGCCTGCGGGGTCTGAGCTTTATCAGCGCCGTACCGGTGGTCCAGTTGTCTTGAAAAAAGCGGTTATGTTGACCGGTGAT CATATTCAAGGTGCGCAGCCTAGCTTTGACGAATATAGCCGTCCGCAAGTCGCAATTAACCTTGATGCGAAAGGTGGTTC AATTTTCTCTAACGTGACTAAAGACAACATCGGTAAGCCGATGGCAACGCTATTTATCGAGTATAAAGATACCGGTGAAA AGAATGCTGACGGTAGCGTTAAGATGAAGAAGATTGAGGAAGTGATTTCGGTTGCTACCATTCAAGCGCGTCTTGGTCGT AACTTTGTTATCACAGGTCTTGAGCATGCTGAAGCACAGAACCTAGCGTTATTGCTACGTGCTGGTGCGCTAATTGCTCC TGTTTATATCGTTGAAGAACGTACCATTGGTCCAAGCCTTGGTAAGGAAAACATCGACAACGGTATGCAAGCCATGATCT GGGGTATGGCTGTTGTACTTATCTTCATGTTGGTTTATTACCGTGGCTTTGGTCTTATTGCTAACTTAGCGCTAACCGCT AACTTAGTGATGGTTGTGGGCGTAATGTCTATGATCCCTGGCGCAGTATTAACCCTACCTGGTATTGCTGGTATGGTGTT AACTGTAGGTATGGCGGTTGATGGTAACGTACTGATTTACGAGCGTATTCGTGAAGAACTTCGTAACGGTCGTAGCGTAC AGCAAGCGATTCATGAAGGATACGGTAACGCATTCTCAACTATCGCCGATGCGAACATCACTACCTTTATGACGGCGCTT ATCTTATTTGCCGTAGGTACGGGAGCTGTGAAAGGCTTCGCGGTGACCTTAATGATCGGTATCGCCACTTCTATGTTTAC TTGTATCGTAGGTACACGCTCAATCGTGAATGCGATATGGGGTGGTAAACGCGTGAAGAAACTGTCTATTTAA Protein sequence : MWKNLMVIIIISIGAFYAIPNLFGEDHAVQVVATRGAEVSASTMSTVNEVLKSKGIAVKRSELENGQLLVRVNNGEEQLL AKEAISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKIRYA GIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFQDKTVGDDYVLVANPSEAYLKQIKEEALQQNITTLRNRVNELGVA EPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGD HIQGAQPSFDEYSRPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATIQARLGR NFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTA NLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTAL ILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-118 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-119 | 47 |
