Gene Information

Name : Spea_1837 (Spea_1837)
Accession : YP_001501695.1
Strain : Shewanella pealeana ATCC 700345
Genome accession: NC_009901
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2235133 - 2235819 bp
Length : 687 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein

DNA sequence : 
ATGATTAAAGTTCATCAATTAAAAAAAGAATATCCCATGGGAGACAGCTGCGTGAAAGCGCTCAATGGGGTAAGCTTCTC
TATCGCGAGAAATGAGTTTGTTGCCATCATGGGGCCATCTGGGTCAGGGAAGTCAACATTAATGAACATCATTGGCTGTC
TAGACAAGCCGACGTCGGGTAGCTATAGCCTGAACGAACAAGCGGTGGCCGAGTTAGATGATGATGCCTTGTCTGCTGTA
CGTAACAAGGAGATTGGTTTTGTGTTTCAAAGCTTCCACTTGTTACCCCGTTTATCTGCTTTGCAAAATGTGTTGTTGCC
CTTAAGGTTCTCAGCTTCACCTGTTCAAGATACCGATTATGCCCATGAGTTACTCAAGCGAGTCGGTCTCGATACTCGCC
ATGATCATAGACCCAATCAGTTATCGGGTGGACAAAGACAGCGTGTGGCCATTGCTCGCTCTTTAGTGAATCGACCTGCA
ATCCTATTAGCCGATGAGCCCACTGGCGCGCTAGACAGTAAAACCTCGGTCGAGATCATGGCGCTGTTTACTGAGTTACA
TAAAGCCGGACAAACCATCATCTTAGTGACTCATGAAGAAGAGGTTGCCGCTTATGCCCAGCGTATTATTCGTATGCGCG
ATGGTGACATCGTCGAGATAGAAGAAAGAGGTGAAAATGCCGCTTAA

Protein sequence : 
MIKVHQLKKEYPMGDSCVKALNGVSFSIARNEFVAIMGPSGSGKSTLMNIIGCLDKPTSGSYSLNEQAVAELDDDALSAV
RNKEIGFVFQSFHLLPRLSALQNVLLPLRFSASPVQDTDYAHELLKRVGLDTRHDHRPNQLSGGQRQRVAIARSLVNRPA
ILLADEPTGALDSKTSVEIMALFTELHKAGQTIILVTHEEEVAAYAQRIIRMRDGDIVEIEERGENAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Spea_1837 YP_001501695.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-54 56
Spea_1837 YP_001501695.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-44 50
Spea_1837 YP_001501695.1 ABC transporter-like protein CP001581.1.gene598.p Protein 2e-47 45
Spea_1837 YP_001501695.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-44 44