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Name : rnhA (Spea_2403) Accession : YP_001502258.1 Strain : Shewanella pealeana ATCC 700345 Genome accession: NC_009901 Putative virulence/resistance : Unknown Product : ribonuclease H Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0328 EC number : 3.1.26.4 Position : 2932212 - 2932769 bp Length : 558 bp Strand : + Note : An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids DNA sequence : ATGAATTTATACATTTCTCAGTTAAATTTTTTGGGTATACTCGCCCGCAATTATAGCTATGGTAGCAACTTGATGACTGG ACTGAAACAGATCTCTATCTATACCGACGGTTCTTGCCTAGGAAATCCGGGCCCTGGCGGTTATGGCATCGTTTTAAAGT ACAAAAAACGCACCAAAGAACTGGCCGATGGTTTTGCCCTCACCACCAATAATCGTATGGAGATGCTTGCGCCGATTATA GCCCTCGAAGCGCTAAAAGTGCCATGCGAGGTCATATTAACCAGCGATAGCCAATATATGCGTCAAGGGATCACCCAGTG GATCCATGGTTGGAAACGTAAAGGGTGGATGACTTCAACAAACCAGCCCGTGAAAAATGTCGATCTTTGGAAGCGTTTAG ATACAGTATCACAACGCCACCAAGTTGAATGGCGCTGGGTAAAAGGCCACGCAGGACATAGCGAGAACGAACGCTGTGAC GATCTTGCGCGCCAAGCTGCAGAGGCTAAGCCCACACAAGAAGATAACGGGTACCTAGCTCAGCAAAAACAAGACTAA Protein sequence : MNLYISQLNFLGILARNYSYGSNLMTGLKQISIYTDGSCLGNPGPGGYGIVLKYKKRTKELADGFALTTNNRMEMLAPII ALEALKVPCEVILTSDSQYMRQGITQWIHGWKRKGWMTSTNQPVKNVDLWKRLDTVSQRHQVEWRWVKGHAGHSENERCD DLARQAAEAKPTQEDNGYLAQQKQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rnhA | AAO17224.1 | RnhA | Not tested | tcd island | Protein | 6e-50 | 62 |
