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Name : Dole_0702 (Dole_0702) Accession : YP_001528589.1 Strain : Desulfococcus oleovorans Hxd3 Genome accession: NC_009943 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 829582 - 833688 bp Length : 4107 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, DNA sequence : ATGTCAGGCGAATCTATGTTGAACAGGCGCATTAGAAAGCAATTCGGCAAGCTGGACAAGATCGTGGAAATTCCCGATCT GATCGGTATGCAGAAAGAGTCCTACGGACGATTCCTGCAGCAGGGGGTTCCGCCGGAAAAGCGTGAAAAGATCGGGTTGC AGGCGATCTTTCAGTCGGTATTTCCCATCAAGGATTTTACCAAAAGCGCCTCCCTCGAATTTGTCTCCTACTCCTTCGGC GGCGTTAAACATTCGGTGGCTGAATGCATTCAGCGGGGCATGACCTACGAGATTCCCGTGCGCATACGGGTCCGGCTGGT GGTCTATGACATGGATGAGACATCGGGGACATCCAGCATTCGGGACATCAAGGAACAGGAGATCTATTTCGGCGCCATTC CGCTGATGACGGACAACGGCACCTTTATCATCAACGGTACCGAGCGGGTGGTGGTGAGCCAGCTGCACCGGTCGTCGGGC ATTTTCTTTGATCACGACCAGGGAAAGACCCACTCTTCCGGCAAGGTGGTCTACAGTTCCCGCATCATTCCGGTGCGGGG GTCCTGGATCGATATCGAGATCGACCCCAAGGACATCGTCCACATGCGCATCGACCGGCGGCGAAAGTTCCCGGGCACCA TCCTGTTCAAGGCCCTGGGCTACACGGTAAAGGACATTCTTGATTATTTTTACACCAAGGAGCGCGTTTTTGTCCGCAAG AAGAAGGTGTTCAAAGCCTTCAGTGAAGATTCGCTGCGCGGCCAGCGGGCCACGGTCCGTATCAAGCATCCCGAAACCGG CGACCTGATCGTGGACAAGGGCCGGATCTTCAACAAGACCGTGTTGAAAAACATGAAGTCCGCGGGCATTGACATGGTGC CCATTCGCCCTGAAGACGTGGTGGGAGCCGTTCTGGCCGCGCCATTGGCCGATTCCTCTACCGGCGAAATGCTGGCCGAT GCCGGTGATTTTATCAGCGAAGAGGTGTTTGAGCGCATCGGCGAGCTGGGTATTGAGGAACTCCAGATTCTGTTTATCGA CGGCGCCGGCAGCACCGATTCCATTGTCAAAACCCTGCTGCTGGACAAGGTGAACACCAAGGAAGAGGCCCTGATCGATA TCTACCGGCGTATTCGACCGGGCAACCCGGCCACGCCGGAAGTGGCCCAGGATTTTATTGATCATCTTTTTTTCAAGCCT GACTACTACGATCTTTCAGCCGTGGGCCGGCTGAAACTCAACCACCGGCTGGGCGCCAACGCGCCGGTGAGCCTGCGGAC CCTGCGGCGGGAAGACCTGCTGCTGGCCGTAAAAACCCTGATTCACCTGAAAAACACCCAGGGGCCGGTGGACGACATCG ACCATCTGGGCAACCGCCGGGTGCGGGCCGTGGGCGAGCTGCTGGAAAACCAGTACCGCATCGGCCTGGTGCGCATGGAG CGGGCCATCAAGGAGCGCATGAGCCTTCAGGAAGTGGACGCGCTCATGCCCCACGACCTGATCAATCCCAAGCCGGTCTC CGCGGTGGTGCGGGAATTCTTCGGTACCAGCCAGCTCTCCCAGTTCATGGACCAGACCAACCCGTTGTCCGAGACCACCC ACAAGCGGCGGCTCTCCGCCCTGGGCCCCGGCGGCCTGACCCGGGAACGGGCCGGATTCGAGGTCCGGGACGTGCATCCC TCCCATTACGGCCGCATCTGTCCCATTGAAACGCCGGAAGGCCCCAACATCGGCCTGATCGTTTCGCTGAGCACCTATGC GCGTGTCAACGGCTATGGTTTTATCGAGACGCCGTACCGCGTGGTCAAAGACACCAAAGTTTCCAAAGAGATTAAAATGC TGCCCGCCTTTGAAGAAGGGGAGCATCCCATTGCCCAGGCCAACGCCCCCATCGGCAAGGACGGCCGGTATGTCAACCCG GTGGTCATTGCCCGGGTGGCCGGCGAGTTCAGCATGATCAAGGCCAGTGACGTGGAGCTCATGGATGTGTCGCCCAACCA GCTGGTCAGCGTCTCGGCCTCCCTGATCCCCTTTCTTGAAAACGACGACGCCAACCGGGCCCTGATGGGGTCCAACATGC AGCGACAGTCCGTGCCCCTGGCCAGGACCAGCGCGCCCCTGGTGGGCACGGGTGTGGAAAAGGTGGTGGCCCGGGATTCG GGTGTGGCCGTGGTGGCCCGCCGGCCCGGCGAGGTCGTTTACGTGGACTCCGGCCGCATCGTGGTCCGTCACGACACCGA CGACAAGGACCCGGAAGCCAAACCGGTAACCGTCTACAACCTGTCCAAGTTCATTCGCTCCAACCAGAACACCTGTTTCA ACCACCGGCCCATCGTCAAGAAGGGGCAGCGGGTGGCGCCCGGCGACGTGCTGGCTGACGGCCCGGCCACGGAAAAGGGC GAGCTGGCCCTGGGCAAGAACGTGACCGTGGCCTTCATGCCATGGGGCGGGTACAACTTTGAAGATTCCATCCTGGTGGG GGAAACCCTGGTGCGGGACGGCGTGTTTACCTCGATTCACATTGAAGAGTTCGAGGTGGTGGCCCGGGACACCAAGCTGG GCAAGGAAGAGATCACCTGCGACATTCCCAATGTGGGCGAAGAGAGCCTGGTGGACCTGGATGAGAGCGGCATCGTCCGC CTGGGCGCCGAGGTCAAGCCCGGCGATGTTCTGGTGGGCAAAATAACGCCCAAGGGCGAGACGCAGCTCTCCCCGGAAGA GAAACTGCTGCGCGCCATCTTCGGCGAAAAGGGCGGCAATGTGAAAGACACCTCCCTTCGGGTGCCCCCCGGCGTCAGCG GCACGGTCATCGATGCCAAGGTCTTCACCCGTCGGGGCGTGGAAAAGGACACCCGCACCCGCATGATCGAGGAAGAAGAG ATCCGTGTGCTGGAGAAGAACCGGGACGACGAGATTGCGGTCATCGAAGAGGTGACCCGGGAACGGCTCAAGGCCCTGCT GACGGGACAGAAGTGTGATACGCCGGTCAAGAAGGGCAAAAAGACGATTCTTGCCAAGGGCGACAAGATCACGGCCGCCC TGTTTGACGAGGTCCCCACCTCCCAGTTTGAAAAGCTCGCCGTGACCTCCGACAGTGTCACGGAGCAGGCCCACCGGGTA TTTGAGTGGTATCGGACCCAGGTTGATGCCTGCCGGGAAGAGTTCGAGGCCAGGATCAGCCGCTACGGTGCCGGCGAGGA GCTGCCCCCCGGCGTGATCAAGATGGTCAAGGTGTACGTGGCCATGAAACGGGTGCTCTCCACAGGTGACAAGATGGCCG GACGCCACGGCAATAAGGGCGTGGTGTCGCGTATTCTGCCCCAGGAAGACCTGCCCTACTTTGAAGACGGAACCACGGTG GACATGGTGTTAAACCCTCTGGGTGTGCCGTCCCGTATGAACGTTGGACAGATTCTGGAGATTCATCTGGGCCGGGCGGC CAGGGTCCTTGGCGATCAGATCAGCACGATGCTGGAAGAAAAGAAATACAAGGACTTAAAGAAAAAGCTGTCCGCCGTTT TCAATAAGGAGATACCGGCCGCCGAGATCGAGGCCATGAGTTCGGCCCGTCTCTGCGAGTTCGCGTCTGAATACAAAGAC GGTGTTCACATGGAGACTCCGGTTTTTGACGGTGCCAAGGAGGCGGAGATCAAGGCCCTGCTCAAGGAGGGCGGCGCAGA CGAGACCGGACAGGCGATCCTTTACGACGGCCGTACCGGCCAGCCTTTTGACGAGCGGATCACCGTGGGCACCATGTACA TGCTCAAGCTCCACCATCTGGTGGACGACAAGCTGCACGCCCGGTCTATCGGCCCCTATTCACTGGTCACCCAGCAGCCC CTGGGCGGCAAGGCCCAGTTCGGCGGCCAGCGTCTGGGCGAAATGGAAGTGTGGGCCATGGAGGCCTATGGCGCGGCGTA CGCGCTGCAGGAGTTCCTTACGGTCAAGTCCGACGACATCGCCGGCCGGACCCGCATGTACGAGAAGATCGTCAAGGGCC AGAACGTCCTGGACCCGGGGATTCCCGAGTCTTTCAAGGTTCTGACCAAGGAGATGAAGGCGCTTGGGCTGGATGTAACC CTTATTGAACAGCAAGATAAGGAGTAA Protein sequence : MSGESMLNRRIRKQFGKLDKIVEIPDLIGMQKESYGRFLQQGVPPEKREKIGLQAIFQSVFPIKDFTKSASLEFVSYSFG GVKHSVAECIQRGMTYEIPVRIRVRLVVYDMDETSGTSSIRDIKEQEIYFGAIPLMTDNGTFIINGTERVVVSQLHRSSG IFFDHDQGKTHSSGKVVYSSRIIPVRGSWIDIEIDPKDIVHMRIDRRRKFPGTILFKALGYTVKDILDYFYTKERVFVRK KKVFKAFSEDSLRGQRATVRIKHPETGDLIVDKGRIFNKTVLKNMKSAGIDMVPIRPEDVVGAVLAAPLADSSTGEMLAD AGDFISEEVFERIGELGIEELQILFIDGAGSTDSIVKTLLLDKVNTKEEALIDIYRRIRPGNPATPEVAQDFIDHLFFKP DYYDLSAVGRLKLNHRLGANAPVSLRTLRREDLLLAVKTLIHLKNTQGPVDDIDHLGNRRVRAVGELLENQYRIGLVRME RAIKERMSLQEVDALMPHDLINPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSALGPGGLTRERAGFEVRDVHP SHYGRICPIETPEGPNIGLIVSLSTYARVNGYGFIETPYRVVKDTKVSKEIKMLPAFEEGEHPIAQANAPIGKDGRYVNP VVIARVAGEFSMIKASDVELMDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQSVPLARTSAPLVGTGVEKVVARDS GVAVVARRPGEVVYVDSGRIVVRHDTDDKDPEAKPVTVYNLSKFIRSNQNTCFNHRPIVKKGQRVAPGDVLADGPATEKG ELALGKNVTVAFMPWGGYNFEDSILVGETLVRDGVFTSIHIEEFEVVARDTKLGKEEITCDIPNVGEESLVDLDESGIVR LGAEVKPGDVLVGKITPKGETQLSPEEKLLRAIFGEKGGNVKDTSLRVPPGVSGTVIDAKVFTRRGVEKDTRTRMIEEEE IRVLEKNRDDEIAVIEEVTRERLKALLTGQKCDTPVKKGKKTILAKGDKITAALFDEVPTSQFEKLAVTSDSVTEQAHRV FEWYRTQVDACREEFEARISRYGAGEELPPGVIKMVKVYVAMKRVLSTGDKMAGRHGNKGVVSRILPQEDLPYFEDGTTV DMVLNPLGVPSRMNVGQILEIHLGRAARVLGDQISTMLEEKKYKDLKKKLSAVFNKEIPAAEIEAMSSARLCEFASEYKD GVHMETPVFDGAKEAEIKALLKEGGADETGQAILYDGRTGQPFDERITVGTMYMLKLHHLVDDKLHARSIGPYSLVTQQP LGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDIAGRTRMYEKIVKGQNVLDPGIPESFKVLTKEMKALGLDVT LIEQQDKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 54 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 55 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 54 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 53 |
| Dole_0702 | YP_001528589.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
