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Name : Dshi_2896 (Dshi_2896) Accession : YP_001534230.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Unknown Product : FAD-binding oxidoreductase/transferase Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 3051689 - 3053131 bp Length : 1443 bp Strand : - Note : TIGRFAM: TIGR00387 glycolate oxidase, subunit GlcD; COG: COG0277 - FAD/FMN-containing dehydrogenases; PFAM: PF01565, PF02913; SWISSPROT P0AEP9: Glycolate oxidase subunit glcD; similar to glycolate oxidase subunit glcD DNA sequence : ATGGAGATGCCGACACCGGATGCGGGGATCCTGGCCAAGAAGGACAGGGTCGTCGCGTTGCTGCAAGAGGTTCTGCCAAG GGACGCGGTGATCCATGAGCCGCATGAGACCCGCGCCTATGAATGCGATGCGCTCACAGCTTACAAGTGCCCGCCGCTTG CCGCGGTCCTGCCGTCGAGCACCGAGGAGGTCGCCGCGGTCCTGAAGATATGCCATGCCGAAGGGGTGCCGGTGGTGCCG CGCGGGTCGGGCACGTCGCTTGCGGGCGGGGCCTTGCCCACCGCCGATTGCGTGATCCTCGGCGTGGCCCGGCTGAACAA GGTGCTGGAGACCGATTATGACAACCGGATCATCCGGGTGCAGTCGGGGCGCACGAACCTGAGCGTGAGCGGCGCCGTGG AGGAAGAGGATTTCTTCTATGCGCCCGACCCGTCCTCGCAGCTGGCCTGCGCCATCGCCGGCAACATCGCGATGAATTCC GGCGGGGCCCATTGCCTGAAATACGGGGTGACGACCAACAACCTGCTGGGGGTCACCATGGTGATGATGGATGGTACCGT GGTCACGATCGGCGGTGCGCATCTGGATGCGGGGGGGCTCGACCTGCTGGGGGTGATCTGCGGCTCCGAAGGACAGTTGG GCGTGGTGACCGAGGCGACGCTGCGCATCCTGCGCAAGCCCGAAGGCGCGCGTCCGGTCCTGATCGCCTTTGACGAGAAC GAGGTCGCGGGGGCCTGCGTGGCCGACATCATCAAGGCCGGCGTGCTGCCCGTGGCGATCGAGTTCATGGACAAGCTCTG CATCGAGACCTGCGAGAATTTCGCCAAGGCGGGCTACCCGGAATGCGAGGCGCTGCTGATCGTGGAGGTCGAAGGCTCCG AGGCGGAGATCGACGCGCAGCTCGGCGTGATCCTCGACATCGCGCGCAAGCACAACCCGGTGGAGCTGCGCCAGAGCCAG TCGGCCGAGGAAAGCGCCAAGATCTGGTTGGGTCGGAAATCGGCCTTCGGCGCCATCGGGCAGTTGAACGATTACATGTG CCTCGACGGCACGATCCCGGTCTCGGAACTGCCCTATGTGCTGCGCCGGATCGGGGAGATGTCCAAGGAGTACGGGTTGC AGGTGGGCAACGTGTTCCATGCGGGCGACGGCAACATGCATCCGCTGATCCTGTTTGATGCGAACAAGGACGGGGATCTG GAGCTGTGCGAGGCGTTCGGGGCGGAGATCCTCAAGCTCTGCGTGGAGGTCGGCGGCTGCCTGACCGGGGAGCATGGGGT CGGGATCGAGAAACGCGACCTGATGGGGGCGCAGTTCACGGGTGCGGACATGGAGATGCAGTTGCGGGTCAAGGACGTGT TCGATCCGGCCTGGCTGCTCAACCCGGCGAAGGTGTTTCCCCTGGCGGTGACCGAGGCGCGCCGGGGGCGTGCGGCGGCC TGA Protein sequence : MEMPTPDAGILAKKDRVVALLQEVLPRDAVIHEPHETRAYECDALTAYKCPPLAAVLPSSTEEVAAVLKICHAEGVPVVP RGSGTSLAGGALPTADCVILGVARLNKVLETDYDNRIIRVQSGRTNLSVSGAVEEEDFFYAPDPSSQLACAIAGNIAMNS GGAHCLKYGVTTNNLLGVTMVMMDGTVVTIGGAHLDAGGLDLLGVICGSEGQLGVVTEATLRILRKPEGARPVLIAFDEN EVAGACVADIIKAGVLPVAIEFMDKLCIETCENFAKAGYPECEALLIVEVEGSEAEIDAQLGVILDIARKHNPVELRQSQ SAEESAKIWLGRKSAFGAIGQLNDYMCLDGTIPVSELPYVLRRIGEMSKEYGLQVGNVFHAGDGNMHPLILFDANKDGDL ELCEAFGAEILKLCVEVGGCLTGEHGVGIEKRDLMGAQFTGADMEMQLRVKDVFDPAWLLNPAKVFPLAVTEARRGRAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 6e-93 | 48 |
