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Name : cycK (Dshi_3411) Accession : YP_001534745.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CycK Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 3589195 - 3591189 bp Length : 1995 bp Strand : - Note : TIGRFAM: cytochrome c-type biogenesis protein CcmF PFAM: cytochrome c assembly protein KEGG: mag:amb4200 cytochrome c biogenesis factor DNA sequence : ATGATCCCTGAGATTGGCAATTTCGCCCTGATGCTCGCGCTGGCCGCGGCACTGGTGCAAAGCGTGCTTCCCATGGTGGG GGCCGCGCAACGCAATGTTCTGTGGATGCAGTCGGCGGTGACAACCGCACTGATCCAGTGCGGACTTTTGGCGGTCGCGT TCGCGGCGCTGATGCGGTCGTTCATCGTAAGCGACTTCACGGTCGTGAACGTTGTTGCAAACTCCCATTCTCTGAAACCG ATGATCTACAAGGTTGCGGCCACCTGGGGGTCCCATGAAGGCTCACTTCTTCTGTGGGTGCTGATTCTGGCGATCTTCGG GGCCGGTGTCGCAGTGCTGGGCAAGAACATCCCTGCCGAGTTGCGCGCACGCACCTTGTCTGTGCAGGCCTGGATCAGCG TCGGCTTCCTGTCCTTCATGATCTTTACATCAAACCCGTTCGATCGCATGTTCCCGGCGCCTTTGAATGGCAATGACCTG AACCCGCTGCTGCAGGATATCGGTCTCGCCCTGCACCCGCCGCTTCTATATCTCGGCTATGTGGGCTTCTCGATCGTGTT CTCCTTCGCGGTCGCGGCGCTGATCGAGGGTCGTGTCGATCCGGCTTGGGCGCGTTGGGTCCGTCCGTGGACACTGGCGG CCTGGGTCAGCCTGACGGGCGGAATCGCGCTTGGCTCCTGGTGGGCGTACTACGAGCTCGGCTGGGGCGGCTGGTGGTTT TGGGACCCGGTGGAAAACGTGTCCTTCATGCCGTGGCTTCTGGGAACTGCCCTGCTGCACTCGGCCATCGTGACCGAGAA ACGCGATACATTCAAAAGCTGGACGATCCTGCTGGCGATCCTGACCTTCTCGCTCTCCCTCTTGGGCACGTTCATCGTGC GCTCGGGGCTGCTGACCTCGGTTCATGCCTTCGCGGTCGATCCGGAGCGGGGGGTCTATATCCTCGGGCTGCTCTTCGTC TCCATCGGCGGGTCGCTGGCGCTATATGCTTGGCGGGCACCGCAACTCGAAGGGGGCGGTCTGTTCACCCCGATCTCCCG CGAGGCGGGTCTGCTGATCAACAACCTGCTCTTGGCCACGGCCACGGCGGCGGTTCTGTTCGGTACGCTCTATCCGCTTT TCCTGGAGGCGGTGACCGGCGACAAGATCTCTGTCGGACCGCCCTTCTTCAACGCGAGCTTCATTCCGATCATGCTGCCT CTGGTGTTCATGATGGGAATCGGGCCGTTCCTGAGCTGGAAACGCGCGGACCTGCCCGGGGTTATGTCCCGTCTGAAGTT CGCCATCGGGCTAGGCCTGATTGCTGCTCTCTGGGCCTGGTGGATGGATACTGACGGTCCGGTCCTGGCGATCATCGCCA TGGGCGTGGCCGGATGGCTCCTGGTGGCGTCGGCGCGCGAATGGTTGTCTCGCATAAAGGCTGGGGAAGTTCCGCTGGCA GAAAGCCTGCGCCGGGCGAAGAACCTGCCCCGCGCGGCCCATGGCATGACCATCGCCCATATGGGGGTTGCGGTTTTGAT CCTCGGCATGGTCGGATCTTCCGCCTGGAAAACGGAACAGATCCTGTTTGCCAGTCCGGGTACCGTGGTCGAGATTGCCG GCTACGAGGTCCGCTTCGACAGGGTCGAGCGTGTCCGCGGTCCGAATTACGTGTCCGACATGGGGACCCTGACTGCGTTT CGCGACGGGGAGCAGGTCGCGGTTCTGCAACCAGAGCGGCGCTGGTACCCGGTGGCCGAAATGCAGACCACCGAGTCCGC CATCAGGTCCACCCTGGCCGGAGACCTCTACGTGACCATTGGCGAGCCGGCGGCGGATCGTGCATCCAACGAATGGACTT TGCGTATCCTTTTCGAACCTTTCGTAAACTTCATCTGGATCGGCACGGTGTTTCTCGTGATCGGCGGCACGTTCTCTCTG ACGGATCGCAGGCTGCGGGTCGGGGCACCCAAGAGCGCGGCACGGCCTCCGATCCAGGCCACCCCTGCGGAGTGA Protein sequence : MIPEIGNFALMLALAAALVQSVLPMVGAAQRNVLWMQSAVTTALIQCGLLAVAFAALMRSFIVSDFTVVNVVANSHSLKP MIYKVAATWGSHEGSLLLWVLILAIFGAGVAVLGKNIPAELRARTLSVQAWISVGFLSFMIFTSNPFDRMFPAPLNGNDL NPLLQDIGLALHPPLLYLGYVGFSIVFSFAVAALIEGRVDPAWARWVRPWTLAAWVSLTGGIALGSWWAYYELGWGGWWF WDPVENVSFMPWLLGTALLHSAIVTEKRDTFKSWTILLAILTFSLSLLGTFIVRSGLLTSVHAFAVDPERGVYILGLLFV SIGGSLALYAWRAPQLEGGGLFTPISREAGLLINNLLLATATAAVLFGTLYPLFLEAVTGDKISVGPPFFNASFIPIMLP LVFMMGIGPFLSWKRADLPGVMSRLKFAIGLGLIAALWAWWMDTDGPVLAIIAMGVAGWLLVASAREWLSRIKAGEVPLA ESLRRAKNLPRAAHGMTIAHMGVAVLILGMVGSSAWKTEQILFASPGTVVEIAGYEVRFDRVERVRGPNYVSDMGTLTAF RDGEQVAVLQPERRWYPVAEMQTTESAIRSTLAGDLYVTIGEPAADRASNEWTLRILFEPFVNFIWIGTVFLVIGGTFSL TDRRLRVGAPKSAARPPIQATPAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 3e-125 | 48 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 8e-95 | 47 |
