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Name : clpB (Dshi_0617) Accession : YP_001531964.1 Strain : Dinoroseobacter shibae DFL 12 Genome accession: NC_009952 Putative virulence/resistance : Virulence Product : chaperone protein clpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 609070 - 611685 bp Length : 2616 bp Strand : + Note : PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein SMART: AAA ATPase; high swissprot hit to Chaperone protein clpB from Brucella suis; high Ref ZP hit to ATP-d DNA sequence : ATGAACATGGAAAAGTTCACGGAACGGTCGCGCGGGTTCCTTCAGGCTGCGCAGACAATCGCGATGCGGGAAAACCACCA GCGCATGGTGCCCGAGCATCTGTTGAAGGCCCTTCTGGATGACGAGGAAGGCTTGGCCGCCAACCTGATCGCCCGTGCGG GCGGCGACGCGGCCCGCGTGCGCGAGGCGCTTGCCGCGGCCCTCGACAAGCTGCCCAAGGTGTCCGGCGACGGCGCCCAG ACCTATCTCGATCAACAGACCGCGAAGGTTCTGGACGAGGCCGAAAAGCTCGCGACCAAGGCCGGGGACAGTTTCGTGCC CGTCGAACGCATCCTGACCGCGCTTGCCGTGACCAAGTCCGGTGCCAAGACCGCCCTGGAAGCGGGCGGCGTCTCGGCGC AGGCGCTGAATGGCGCGATCAACGATATCCGCAAGGGGCGCACGGCCGACACCGCGTCGGCGGAATCGGGGTATGACGCG CTCAAGAAATTCGCGCGCGACCTGACCGAGGCCGCCGCGGACGGCAAGATCGATCCGATCATCGGGCGCGACGAGGAAAT TCGGCGCGCGATGCAGGTCCTCAGCCGCCGGACCAAGAACAACCCTGTCCTGATCGGCGAGCCGGGCGTCGGCAAGACCG CCATCGCCGAGGGCCTCGCCCTGCGGATCATCAATGGCGATGTGCCGGAGTCCCTGCGCAACAAGAAGCTGATGGCGCTG GACATGGGCTCGCTCATCGCGGGCGCGAAATACCGTGGCGAGTTCGAGGAGCGGTTGAAATCCGTCCTGTCCGAAGTGAC GGCGGCGGCGGGCGAGATCATCCTGTTCATCGACGAGATGCACACGCTCGTGGGCGCGGGCAAGGCGGATGGGGCGATGG ACGCCTCCAACCTGCTGAAACCGGCGCTGGCGCGGGGCGAGTTGCACTGCGTGGGGGCGACGACGCTCGACGAGTATCGC AAATACGTGGAAAAGGACGCGGCGCTTGCCCGCCGGTTCCAGCCGGTCATGGTGCAGGAGCCCACGGTCGAGGATACCGT GTCGATCCTGCGCGGCATCAAGGAGAAATACGAGTTGCACCACGGTGTGCGGATCTCGGACTCGGCCCTGGTGGCGGCGG CGACGCTGAGCCATCGTTATATCACCGACCGGTTCCTGCCGGACAAGGCGATCGACCTCGTGGACGAGGCCGCGAGCCGG TTGCGCATGGAGGTGGACAGCAAGCCCGAGGAGCTCGACGCGCTCGACCGCGAGATCCTGCAAAAGCAGATCGAGGCGGA GGCCTTGCGCCTGGAGGATGACGCGGCCTCGCGCGAGCGGCTGGCCAGCCTTGAAAAGGACCTGTCGGACCTGCAGCAGC GCAGCGCCGAGATGACCGCCCAGTGGCAGTCCGAGCGCGACAAGTTGGCCTCGGCTCGCGACCTGAAGGAACATCTCGAC AAGGCGCGCGCCGAGTTGGAGATCGCCAAGCGGGAGGGCAACCTCGCCCGCGCGGGGGAGTTGTCCTATGGCGTCATTCC GGGGCTGGAGAAGCAGCTGGCCGAAGCCGAGAGCGGCGAGGGCGACGTGATGGTCGAAGAGGCCGTGCGTCCCGAGCAGA TCGCGAGCGTTGTCGAACGCTGGACCGGTATTCCGACCTCCAAGATGCTGGAGGGGGAGCGCGAGAAGCTCTTGCGCATG GAAGAGGAGATCGGGCGCCGGGTGATCGGGCAGAAGACCGCCGTGAATGCCGTGGCCAATGCGGTGCGCCGGGCGCGCGC GGGGCTGAACGACGAGAACCGGCCCTTGGGCTCGTTCCTCTTTCTCGGGCCGACCGGGGTCGGCAAGACCGAGCTGACCA AGGCCGTCGCCGAGTTCCTGTTCGACGACGACAGCGCCATGGTGCGGATCGACATGTCCGAATTCATGGAGAAACACGCG GTCGCGCGTCTGATCGGGGCCCCTCCGGGGTATGTCGGGTATGACGAGGGCGGGGTGCTGACCGAAGCGGTGCGGCGCCG GCCCTACCAGGTCGTGCTGTTCGATGAGGTCGAGAAGGCCCACCCGGACGTGTTCAACGTGCTCCTGCAGGTGCTCGACG ACGGTGTGCTGACCGACGGGCAGGGGCGCACGGTGGACTTCAAGCAGACGCTGATCGTGCTGACCTCGAACCTCGGGGCG CAGGCGCTCAGCCAATTGCCCGATGGCGCGGACGCCAGTGCGGCCAAGCGGGACGTGATGGACGCGGTGCGCGCCCATTT CCGGCCCGAGTTCCTGAACCGGCTGGACGAGACGATCATCTTCGACCGCCTGGTGCGGGACGACATGGACGCGATTGTGG ATATCCAGCTCGCCCGGCTGCAGAAGCGCCTGGATGCGCGCAAGCTGACCCTGGCGCTGGACGATGCGGCGCGCAGCTGG CTTGCGGATGAAGGCTATGACCCTGTGTTCGGGGCCCGGCCCCTCAAGCGCGTGATCCAGCGGGCGCTGCAGGACCAGTT GGCCGAGATGATCCTGGCCGGGGACGTGACCGACGGCGAGACCATTCCGGTCAGCGCCGGGCCGGACGGGCTGCTGGTCG GCGACAGGGTGTCGACCTCCCGCAGGGTTCCGCCGCAGGACGCCGTCGTCCACTGA Protein sequence : MNMEKFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARVREALAAALDKLPKVSGDGAQ TYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAVTKSGAKTALEAGGVSAQALNGAINDIRKGRTADTASAESGYDA LKKFARDLTEAAADGKIDPIIGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVPESLRNKKLMAL DMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEYR KYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKEKYELHHGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASR LRMEVDSKPEELDALDREILQKQIEAEALRLEDDAASRERLASLEKDLSDLQQRSAEMTAQWQSERDKLASARDLKEHLD KARAELEIAKREGNLARAGELSYGVIPGLEKQLAEAESGEGDVMVEEAVRPEQIASVVERWTGIPTSKMLEGEREKLLRM EEEIGRRVIGQKTAVNAVANAVRRARAGLNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHA VARLIGAPPGYVGYDEGGVLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNLGA QALSQLPDGADASAAKRDVMDAVRAHFRPEFLNRLDETIIFDRLVRDDMDAIVDIQLARLQKRLDARKLTLALDDAARSW LADEGYDPVFGARPLKRVIQRALQDQLAEMILAGDVTDGETIPVSAGPDGLLVGDRVSTSRRVPPQDAVVH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 4e-103 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-103 | 42 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-101 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001531964.1 | chaperone protein clpB | VFG2076 | Protein | 3e-117 | 44 |
| clpB | YP_001531964.1 | chaperone protein clpB | VFG2084 | Protein | 4e-107 | 42 |
