Gene Information

Name : Daci_3563 (Daci_3563)
Accession : YP_001564582.1
Strain : Delftia acidovorans SPH-1
Genome accession: NC_010002
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3911199 - 3911747 bp
Length : 549 bp
Strand : -
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI

DNA sequence : 
TTGATAAGCATTCTTATTATCTTTTGCAGCAGCGATTGCCACTGCGCCGCCTCCTCCGCCCCAGCCTTCTCCGTGCACAG
CCTCTACCAGAACCACCATCCCTGGCTGGAAAGCCTGCTGCGCAAACGCCTGGGCAACCGTGACGATGCCGCCGACCTGG
CCCAGGACACCTTTGTGCGCCTGCTGCGCTCGCCCCTGCCGCAGCAGGACATCCGCGAACCCAGGCGCTACCTGGCCACC
ATCGCCCGGGGCCTGGTCGCCGACCTGTTTCGCCGCCGCACGCTGGAGCAGTCCTATCTGGACTATCTGGCCCAGTTGCC
ACAATCGCTGGCGCCTTCGCCCGAAGAGCAGGCCATCGTCCAGCAGACCCTGCTGGATGTGGACCGCATGCTCCAGGGCC
TTCCTCCCAAGGTTCGCGAAGCCTTCGTGCTGGCCCAGTTCGAGGAACTGAGCTACCCAGAGATCGCCCAGCGCCTGGGT
GTATCGCTGCGCACCGTCAGCAACTACCTGACCCGGGCGATGGAGCATTGCTGCCTGGTCCTGGCATAG

Protein sequence : 
MISILIIFCSSDCHCAASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREPRRYLAT
IARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGLPPKVREAFVLAQFEELSYPEIAQRLG
VSLRTVSNYLTRAMEHCCLVLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-33 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daci_3563 YP_001564582.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 8e-34 50