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Name : secD (Daci_0838) Accession : YP_001561869.1 Strain : Delftia acidovorans SPH-1 Genome accession: NC_010002 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 934220 - 936142 bp Length : 1923 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGATATCCGGTCTGGAAGTACGCGATCATCGTGATCGCGCTGCTGGTGGGGGTGCTCTACACCCTGCCCAATTT TTTCGGTGAGGCGCCTGCGGTGCAGGTCTCCTCGGCCAAGGCCACCGTCAAGGTGGACAACGCGGTGCTGCACAGGGTCG AGGAGGCCTTGAAGGCTGCCGATGTCAAGCCCGATGTGCTGACCATCGAGGGCACCTCGGTGCGGGCGCGCTTCAACACG CCCGACGAGCAGCTCAAGGCCAAGGACGTGATCCAGAAGGCCCTGATCCCCGATGCCAACGACCCGGCCTACATCGTGGC GCTGAACCTGGTGTCGCGCTCGCCGCAATGGCTCACGGCCGTCGGCGCCAAGCCCATGTACCTGGGCCTGGACCTTCGCG GTGGCGTGCACTTCATGCTGCAGGTGGACATGGCTGCGGCCCTGACCAAGAAGGCCGACTCCTTTGCCGGCGACCTGCGC ACCTCGCTGCGCGACAAGAACATCCGCCACGGCGGCGTCTCGCGCAACGGCAACACCGTCGAGATCCGCGTGCGCGACGA GGCCATGCTCACGGCCGCCCGCAATCTGGTCACCGACCAGTTCCCCGATCTGGCGGCCACCTCCGAGCCTGATGGCGCCG GCTTCAAGCTGCTGGCCTCCATCAAGCCCGAAGCCCTGCGCAAGGTGCAGGAGCAGGCGCTCAAGCAGAACATCGTCACC CTGCACAACCGTATCAACGAGCTGGGCGTGGCCGAGCCCGTGATCCAGCAGCAGGGTCTGGACCGCATCATCGTCCAGCT GCCCGGCGTGCAGGACACGGCCAAGGCCAAGGACATCCTGGGCCGCACGGCCACGCTGGAAGTGCGCCTGGTCGACGAAT CCTCCGAGGCGCGCGGCGCCGAGCTGGGCTCGGGCCCCGTGCCATTCGGCTCCGAGCGCTACCTGGACCGCAACGCCCAG GCCGTGATCGTGCAAAAGCAGGTCGTGCTGACCGGCGAGAACCTTACCGACGCACAGCCCGGCTTCGACAGCCAGACCCA GGAACCCACGGTCAACCTGGTGCTCGATGCCAAGGGCGCGCGCATCTTCAAGGACATCACGCGTGAGAACGTGGGCAAGC GCATGGCCATCATCCTGTTCGAAAAGGGCAAGGGCGAGGTCGTGACGGCTCCCGTGATCCGTACCGAGATCGGTGGCGGA CGCGTGCAGATCTCGGGCCGCATGACCACGGCAGAAGCCAACGACACGGCCCTGCTGCTGCGTGCCGGCTCGCTGGCCGC GCCCATGGAGATCATCGAGGAATACACCATCGGCCCCAGCCTGGGCGCCGACAACATCAACCGCGGCATCCACTCCGTGG TCTGGGGCCTGGTGGCCATCGCGGCCTTCATGTGCGTGTACTACATGCTGTTCGGCGTGATCTCCACGGTGGCCCTGTCG GTCAACGTGCTGCTGCTGCTGGCCATCCTGTCCATGCTGCAGGCCACGCTGACCCTGCCCGGCATCGCCGCCATGGCGCT GGCGCTGGGCGTGGCCATCGACTCCAACGTGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCGGCGGCGTCTCGCCGC AGGCCGCCATCCATGCGGGCTACGAGAACGCATGGCACACCATCCTGGACTCGAACGTGACCACGCTGATCGCGGGCCTG GCGCTGCTGGCCTTCGGCTCCGGCCCGGTGCGCGGCTTCGCCGTGGTGCACTGCATCGGCATCCTGACCAGCATGTTCTC GGCCGTGTTCTTCTCGCGCGGCCTGGTCAACCTCTGGTACGGCCGCCGCAAGAAGCTCAAGAGCATCTCCATCGGCCAGG TCTGGAAGCCGGAAGACACCAGCCAGTTGCGCTCGGTGACGGCCAAGGGTTCCAGCGTCGCCGATTCCGGCGCCAACAAC TGA Protein sequence : MNRYPVWKYAIIVIALLVGVLYTLPNFFGEAPAVQVSSAKATVKVDNAVLHRVEEALKAADVKPDVLTIEGTSVRARFNT PDEQLKAKDVIQKALIPDANDPAYIVALNLVSRSPQWLTAVGAKPMYLGLDLRGGVHFMLQVDMAAALTKKADSFAGDLR TSLRDKNIRHGGVSRNGNTVEIRVRDEAMLTAARNLVTDQFPDLAATSEPDGAGFKLLASIKPEALRKVQEQALKQNIVT LHNRINELGVAEPVIQQQGLDRIIVQLPGVQDTAKAKDILGRTATLEVRLVDESSEARGAELGSGPVPFGSERYLDRNAQ AVIVQKQVVLTGENLTDAQPGFDSQTQEPTVNLVLDAKGARIFKDITRENVGKRMAIILFEKGKGEVVTAPVIRTEIGGG RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGLVAIAAFMCVYYMLFGVISTVALS VNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLINERIREELRGGVSPQAAIHAGYENAWHTILDSNVTTLIAGL ALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRRKKLKSISIGQVWKPEDTSQLRSVTAKGSSVADSGANN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-99 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-99 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-99 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 7e-99 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-99 | 42 |
