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Name : secD (SARI_02518) Accession : YP_001571519.1 Strain : Salmonella enterica RSK2980 Genome accession: NC_010067 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2439338 - 2441152 bp Length : 1815 bp Strand : - Note : 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side o DNA sequence : ATGCTGGTCGTCGTGATTATCGTCGGCCTGCTTTACGCACTTCCCAACCTGTATGGTGAGGATCCGGCTGTTCAAATCAC TGGCGTGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATTCCCGCTA AGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACCGATACCCAGTTGCGCGCCCGCGAAGCTCTG GTAAGCGTGCTGGGGGATAAATATGTCGTCGCGCTTAACCTTGCGCCGGCGACGCCGCGCTGGTTGGCGGCTATTCACGC CGATCCGATGAAGCTCGGTCTTGACCTGCGCGGCGGCGTTCACTTCTTGATGGAAGTGGATATGGATACCGCGTTGGGTA AACTCCAGGAACAGAATATCGATAGCCTGCGCAGCGATCTGCGTGAAGAAGGCATTCCTTATACGACCGTTCGTAAAGAA GATAATTATGGGCTGAGCATCACGTTCCGTGACAGCAAAGCGCGTGATGAGGCGATCACGTATCTGACGCCGCGTCATCG TGACCTTGTGATTTCCAGCCAGGGCGGCAACGCGCTTCGCGCGGTAATGACCGATGCGCGCCTGAGTGAAGCGCGCGAGT ACGCCGTTCAGCAGAATATTAACATTCTGCGTAACCGTGTTAACCAACTAGGCGTCGCCGAGCCTGTCGTACAACGCCAG GGCGCCGACCGTATTGTGGTTGAGCTGCCGGGCATTCAGGATACTGCACGCGCGAAAGAAATTCTGGGCGCGACAGCAAC GCTGGAATTCCGTCTGGTGAATACTAACGTTGACCAGGCCGCCGCCGCCGCCGGGCGCGTGCCGGGGGATTCCGAAGTGA AGCAGACCCGTGAAGGTCAGCCGGTTGTATTGTACAAACGCGTGATACTCACTGGCGACCATATCACCGACTCTACGTCA AGCCAGGATGAGTACAACCAGCCGCAGGTTAACATCTCGCTGGATAGCGCGGGCGGCAACATCATGTCTAACTTCACTAA GGACAACATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTATAAAGACAGCGGTAAGAAAGATGCTAACGGTCGCGCCG TACTGGTGAAACAGGAAGAGGTGATTAACATCGCCAACATCCAGTCTCGCCTGGGGAACAGCTTCCGTATCACCGGCATT AGCAATCCAAACGAAGCGCGCCAGCTCTCGCTGTTGCTGCGCGCGGGCGCTCTGATTGCGCCAATTCAGATCGTAGAAGA ACGCACCATCGGCCCGACCTTGGGGATGCAAAACATTAAGCAGGGTCTGGAAGCGTGTCTGGCTGGTCTGGTGGTCTCCA TCCTGTTCATGATCTTCTTCTATAAGAAGTTTGGTCTGATTGCCACCAGCGCCCTGGTCGCTAACCTGGTGTTGATTGTC GGTATTATGTCGCTGTTGCCGGGGGCAACACTCAGTATGCCGGGTATTGCAGGTATCGTCTTAACCCTTGCGGTCGCGGT CGACGCCAACGTTCTGATTAACGAACGTATCAAAGAAGAGTTGAGCAATGGCCGCACGGTACAGCAGGCGATCAACGAAG GCTATGCCGGCGCGTTCAGTTCCATCTTTGATGCTAACATCACGACGCTGATTAAAGTCATCATCCTGTATGCCGTCGGT ACCGGAGCGATTAAAGGGTTCGCGATTACGACCGGTATCGGTGTGGCGACGTCGATGTTCACCGCGATTATCGGTACGCG TGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCTGTCAATTTGA Protein sequence : MLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDSTDTQLRAREAL VSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREEGIPYTTVRKE DNYGLSITFRDSKARDEAITYLTPRHRDLVISSQGGNALRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQ GADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTS SQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGI SNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIV GIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-118 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-118 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 48 |
