Gene Information

Name : clpB (BCAN_A1908)
Accession : YP_001593669.1
Strain :
Genome accession: NC_010103
Putative virulence/resistance : Virulence
Product : chaperone clpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1798199 - 1800823 bp
Length : 2625 bp
Strand : -
Note : -

DNA sequence :
ATGAATATCGAAAAATATACAGAACGGGTCCGCGGCTTCATCCAGTCTGCCCAGACCTTCGCGCTTTCCTCCGGCAATCA
GCAATTCACTCCAGAACATATCCTGAAGGTTCTCATCGACGACGATGAGGGGTTGGCGGCGTCGCTGGTCGAGCGGGCTG
GCGGACGGGTTGGCGATGTGCGCATGGGCCTGCAAAGCGCGCTTGAAAAACTGCCGAAAGTTTCGGGTGGCAATGACCAG
CTCTATCTTTCGCAGCCTCTTGCCAAGGTGTTCTCGCTTGCCGAGGAACTGGCCAGCAAGGCGGGTGACAGCTTCGTCAC
CGTCGAGCGCCTCCTGACGGCGCTGGCGATGGAAAAATCCGCCAAAACCTCCGAGATACTTTCTGCTGCGGGCGTCACCC
CGACGGCATTGAACAGGGTTATCAACGATATGCGCAAAGGCCGCACCGCCGATTCCGCCTCAGCCGAAAGCAATTATGAT
GCTTTGAAGAAATATGCGCGCGATCTGACGGAAGACGCACGCGCGGGCAAGCTTGATCCGGTCATCGGCCGCGATGAGGA
AATCCGCCGCACGATCCAGGTTCTGTCACGCCGCACCAAGAACAATCCGGTGCTGATCGGTGAGCCGGGCGTGGGCAAGA
CCGCAATCGCGGAAGGTCTGGCGCTGCGCATCGTCAATGGCGACGTGCCCGAATCGCTGAAGGACAAGCAATTGATGGCG
CTCGACATGGGCGCGCTGATTGCGGGCGCCAAATATCGCGGCGAATTCGAGGAACGCCTGAAGGCCGTTCTCTCGGAAGT
GCAGACGGCTGCCGGGCAGATCATCCTCTTCATCGACGAAATGCACACATTGGTCGGCGCGGGCAAGACGGATGGCGCAA
TGGATGCGTCGAACCTTTTGAAGCCTGCTCTGGCGCGCGGTGAATTGCATTGCGTCGGCGCCACCACGCTTGAGGAATAT
CGCAAATATGTGGAGAAGGACGCCGCCCTTGCGCGCCGTTTCCAGCCCGTTTTTGTCGATGAGCCAACAGTGGAGGACAC
AATCTCCATTCTGCGTGGCCTGAAGGAGAAATACGAGCAGCACCATAAGGTGCGCGTGTCGGACTCCGCGCTGGTGGCTG
CGGCAACGCTCTCAAACCGCTATATCACCGACCGTTTCCTGCCGGACAAGGCCATCGACCTTGTGGATGAGGCTGCATCG
CGCCTGCGTATGCAGGTCGATTCCAAGCCGGAAGAACTGGACGAGATCGATCGCCGCATCATGCAGCTCAAGATCGAGCG
CGAAGCACTGAAGGTGGAAACGGACGCCGCTTCCAAGGACCGCTTGCAGCGCATTGAAAAGGAACTGAGCGATCTTGAGG
AAGAATCAGCCGAACTGACCGCCAAGTGGCAGGCGGAAAAGCAGAAGCTTGGGCTTGCTGCCGATCTCAAGCGTCAGCTT
GAAGAGGCACGCAATGCACTTGCCATTGCGCAGCGCAATGGTGAGTTTCAGAAAGCGGGCGAGCTTGCCTATGGCACGAT
CCCGCAACTGGAAAAGCAACTTGCTGATGCGGAAAGTCAGGAAAACAAGGGTTCCCTCCTGGAAGAAACCGTGACGCCGG
ACCATGTGGCGCAGGTCATTTCGCGCTGGACCGGCATTCCGGTTGACCGGATGCTGGAAGGTGAGCGCGAAAAGCTGTTG
CGCATGGAAGACGAGATCGGCAAGCGCGTCGTCGGCCAGGGCGAGGCGGTGCAGGCCATATCCAAGGCGGTGCGCCGTGC
CCGTGCCGGTCTGCAGGACCCGAACCGGCCCATCGGCTCGTTCATCTTCCTCGGCCCCACTGGCGTCGGCAAGACGGAAC
TCACCAAGGCGCTCGCCTCGTTCCTGTTCCAGGATGATACCGCAATGGTGCGTATCGATATGTCGGAATTCATGGAAAAG
CATTCCGTGAGCCGCCTTATCGGTGCTCCTCCCGGCTATGTCGGCTATGAAGAGGGTGGTGTGCTGACCGAAGCTGTCCG
GCGCAGGCCCTATCAGGTGATCCTGTTCGACGAGATTGAAAAGGCGCACCCGGATGTCTTCAATGTTCTGTTGCAGGTGC
TGGACGACGGACGCCTGACGGACGGCCAGGGCCGCACGGTTGATTTCCGCAATACGGTCATCATCATGACGTCAAACCTC
GGCGCGGAATATCTCGTCAATCTGGGCGAAAACGATGATGTCGAGACTGTTCGCGATGATGTGATGGGCGTGGTCCGTGC
TTCGTTCCGGCCGGAATTCCTCAACCGTGTTGATGAAACCATCCTGTTCCACCGGCTGCGCCGCGAAGACATGGGTGCAA
TTGTCGATATCCAGATGCAGCGTCTCCAATATCTGCTTTCCGATCGCAAGATCACCTTGCAGCTTGAGGACGACGCCCGC
GAATGGCTCGCCAACAAGGGGTATGACCCGGCCTATGGCGCGCGCCCGCTGAAGCGCGTAATCCAGAAGGAAGTGCAGGA
TCCGCTGGCCGAACGTATCCTGCTTGGTGATATTCTCGACGGTTCCCTCGTCAAGATCACTGCCGGTTCGGATCGGCTCA
ATTTCCGTCCGATCAGCGGTGCGTTCAGCGCGGCGGAGCCGGAAAGAGAAGACGAGAAAGCCTGA

Protein sequence :
MNIEKYTERVRGFIQSAQTFALSSGNQQFTPEHILKVLIDDDEGLAASLVERAGGRVGDVRMGLQSALEKLPKVSGGNDQ
LYLSQPLAKVFSLAEELASKAGDSFVTVERLLTALAMEKSAKTSEILSAAGVTPTALNRVINDMRKGRTADSASAESNYD
ALKKYARDLTEDARAGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKQLMA
LDMGALIAGAKYRGEFEERLKAVLSEVQTAAGQIILFIDEMHTLVGAGKTDGAMDASNLLKPALARGELHCVGATTLEEY
RKYVEKDAALARRFQPVFVDEPTVEDTISILRGLKEKYEQHHKVRVSDSALVAAATLSNRYITDRFLPDKAIDLVDEAAS
RLRMQVDSKPEELDEIDRRIMQLKIEREALKVETDAASKDRLQRIEKELSDLEEESAELTAKWQAEKQKLGLAADLKRQL
EEARNALAIAQRNGEFQKAGELAYGTIPQLEKQLADAESQENKGSLLEETVTPDHVAQVISRWTGIPVDRMLEGEREKLL
RMEDEIGKRVVGQGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEK
HSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL
GAEYLVNLGENDDVETVRDDVMGVVRASFRPEFLNRVDETILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAR
EWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLVKITAGSDRLNFRPISGAFSAAEPEREDEKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 1e-111 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 9e-112 43
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 6e-105 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_001593669.1 chaperone clpB VFG2076 Protein 2e-123 42
clpB YP_001593669.1 chaperone clpB VFG2084 Protein 8e-113 41