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Name : secD (Bpet3649) Accession : YP_001632260.1 Strain : Bordetella petrii DSM 12804 Genome accession: NC_010170 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3858912 - 3860792 bp Length : 1881 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTATCCCCTCTGGAAGTACATTACGGTGCTGGTCGCGGTCGTTATCGGCCTGCTTTACACCCTGCCCAATTT CTACGGCGAATCCCCCGCCGTCCAGGTTTCCAGCGCCAAGGCCACCATCAAGGTCGACAACGCCACGCTCGACCGGGTCC AGCAGATCCTGGCGGCCGGCAACATCCAGGCCACCAACGTCTACTACGAGCAGAACGGCACGCTGGGCACCATCCGCGCC CGCTTCCCGTCCACCGACGTGCAGCTGCAGGCGCGCGACCTGCTCGACAAATCGCTCAACACCGTCGCCGACGACCCGCA ATACACTGTCGCCCTGAACCTGCTGCCCGCCTCGCCGCCCTGGATGCGCGCGCTGGGCTGGTTCGAACCCAAGCCCATGT ATCTGGGCCTGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGCAGGGCGCCCTGACCGCCCGCTACGAC TCGCTGGCGGCCGACGTGCGCACCACTCTGCGCGACGAAAAAGTCCCCAGCCGTGGGGTCGAGCGCGCCGGCACTTCGGT GCTGGCCACCTTCGCCAACACCGATGACCGCGACCGCGCCTACACCACGCTGCGCACCCGGCTGCCCGACCTGCAATTCA CCGAAAGCGAAGATTCCGGCCACCCCGCGCTGGTCGGCATGCTGAGCCCGGCCGCCGTCACGCGCGTGCAAGACTCGGCC CTGAAGCAGAACATCAACACCCTGCACAACCGCATCAACGAGCTGGGCGTGGCCGAACCGGTCATCCAGCAGCAAGGCGC CGACCGCATCGTGGTCCAGTTGCCGGGCGTGCAGGACGTGGCCAAGGCCAAAGAGCTGCTGGGCCGCACCGCCACGCTTG AAATCCGCATGGTCGACGACTCTCCGGCCGCCCAGACGGCCCTGGCCGGCGGTACCGTGCCGTTCGGCCTGGAGCGCTAC ACCGACCGCGACGGCCGCCCCCTGCTGGTGCGCCGCCAGGTCATTCTGACCGGCGAAAACCTGCAAGACGCGCAGCCCGG CCGCGATTCGCAAACCCAGCAGGCGGCCGTGCACCTTACGCTCGACAGCAAGGGCGCGCGCATCTTCCGCGACGTCACCC GCGACAACGTCGGCAAGCGCATGGCCATCCTGCTGTTCGAGAACGGCAAGGGCGAAGTCGTCACCGCGCCGGTCATCCGC AGCGAAATCGCCGGCGGACAGGTGCAGATTTCGGGCAGCATGACCGCCGAAGAAGCCGCCGACACCGCGCTGCTGCTGCG CGCCGGCGCGCTGGCTGCGCCCATGTCCATCATCGAAGAGCGCACCATCGGCCCCAGCCTGGGCGCCGACAACATCGCCA AGGGATTCCATTCCACGCTGTACGGCTTCCTGGCCATCGCGGTGTTCATCATCCTGTACTACCACCTGTTCGGGGTGTTC TCCACCATCGGCCTGTCCATGAACGTGCTGCTGCTGCTGGCGCTGTTGTCCATGCTGCAGGCCACGCTGACACTGCCGGG CATTGCCGCCATCGCGCTGACGCTGGGCATGGCCATCGACTCGAACGTGCTCATCAACGAGCGCATCCGCGAAGAACTGC GCAATGGCGCCTCGCCGCAACAGGCCATCCACCATGGCTTCGAGCGCGCCTGGGGCACCATTCTCGACTCCAACCTCACC ACGCTCATCGTCGGCCTGGCACTGCTGGCCTTCGGGTCGGGCCCCATCCGCGGCTTCGCCGTGGTGCACTGCCTGGGCAT CGTCACCTCGATGTTCAGCTCGGTAGTGGGCGTGCGGGCGCTGGCCAACCTGTGGTACGGCCGCAAGAAGAAGCTTGCCC GGATTTCCATCGGCACCGTCTGGAAACCCAAGGAAAACTGA Protein sequence : MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDNATLDRVQQILAAGNIQATNVYYEQNGTLGTIRA RFPSTDVQLQARDLLDKSLNTVADDPQYTVALNLLPASPPWMRALGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYD SLAADVRTTLRDEKVPSRGVERAGTSVLATFANTDDRDRAYTTLRTRLPDLQFTESEDSGHPALVGMLSPAAVTRVQDSA LKQNINTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQTALAGGTVPFGLERY TDRDGRPLLVRRQVILTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNVGKRMAILLFENGKGEVVTAPVIR SEIAGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFHSTLYGFLAIAVFIILYYHLFGVF STIGLSMNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLT TLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLARISIGTVWKPKEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-98 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-98 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-98 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 7e-98 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-97 | 43 |
