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Name : secD (APJL_1083) Accession : YP_001652083.1 Strain : Actinobacillus pleuropneumoniae JL03 Genome accession: NC_010278 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1199464 - 1201278 bp Length : 1815 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATTATTATTATCGTACTCATCGGGGGCTTATATGCTCTTCCTAACCTATACGGAGAAGATCCGTCGGTTCAAATTTC CGGAACCCGCGGTCAGCAAGCGACGAGCGAAACGCTCGTTCAAGTACAGGGAACGTTGTCGTCAATGAATATCACCCCGA AATCAGCCGTTCTCGAGAACGGCTCGATTTTAGTGCGTTTAGAAAAAGATGAACAACAATTACCTGCCAAAGAAAAAATT TCCGAAGTCTTAGGCGATAAATTTTCCGTAGCGTTAAACCTTGCGCCGGCAACGCCGACTTGGCTAACCGACATCGGCGG TAACCCGATGAAACGAGGCTTGGACTTACGCGGCGGCGTTCGCTTCCTGATGGAAGTGGATATGAACACCGCATTGGCTA AACAACAAGAAAATCTACAAGACAGTTTACGTACGGAACTTCGTAAAGAAAAACTGCAATATAAAGCGGTTAAAAAAGGC GAAAATTTTGCCACGGTAATTGAATTTGCCGATGAGGAAACCGCCAATAAAGCCATTCGTTATATTCGTCGCGTTCACAC TGCTCTTGAAGCCGCTTCTATTAGCCCGACAGAGATTTCATTCAGCCCGTCGGAAAGCGGACTCGCCACCTCACGCGATA CGGCGATTGAACAAAACTTATCCATCTTACGTAAGCGTGTGGAAGAACTCGGCGTGTCGGAGCCGACTATCCAGCGTCAA GGTGCGGATCGTATCGTGGTTGAATTACCGGGTGTGCAAGATACCGCGCGTGCTAAAGAACTTCTCGGTGCAACGGCAAC GCTTGAATTCCGTTTAGTAAATGCGGAAGCCAGCCCGGAATCTGCAGCCAGAGGTATTGTACCGGCGGATTCCGAAATTC AATATACGCGTGACGGCAATCCCGTCGTGTTACGTCGTAAACCGTCTTTAGGCGGCGAACATATTATTGATGCGACCTCG GGCAAAGACGAACGCGGTTTACCGCAAGTAAGTATCAATCTTGATGCCGAAGGCGGTACGATGATGGCGGATATTACCAA AAGCGCGGTAGGCAAACCGATGGCGACCCTTTACAGCGAGTTTAAAGACTCCGGTCGTAAAGACGCTAACGGTAAAGTGA TTTTAGAAAAACACGAAGAAGTGATTAACGTCGCAACCATCAACTCACGCCTTGGCAGCCAATTCCAAATTACCGGTATC GATTCGCCGGCAGAAGCGCAAAATCTTGCGGTACTGTTACGCTCGGGTGCATTGATTGCACCGATTGTGATTGTGGAAGA ACGTACTATCGGCGCTTCTTTAGGTGCGGATAACGTTGCGAAAGGGATGGAAGCCGGTATGTACGGTTTAATCTTAACCA TCGCATTCTGTTTAATTTACTACAAAATGTTCGGAGTGTTTGCGGCAGCGGCTCTGACGGCAAATATGGTGCTGACTATC GGTTTAATGTCATTAATCGGTGCAACACTGACTATGCCGGGAATTGCCGGTATCGTACTGGCGGTAGGTATGTCGGTCGA TGCAAACGTATTGATTTACGAACGTATTAAAGAAGAACTGCGTAACGGACGATCAATCCAACAAGCGATTCACGAAGGTT ATAACGGTGCGTTCACCTCGATTTTCGACTCGAACTTAACCACGATTTTAACCTCGTTAGTGCTGTATGCGGTCGGTACT GGTCCGGTAAAAGGCTTTGCAATTACGCTTGCACTTGGGGTAATGATTTCGATGTTTACCGCAATTACCGGTACTCGTAT GCTCGTAAACTGGGTGTACGGCGGCAATAAACGTGTGAAAAAACTTTGGATTTAA Protein sequence : MIIIIVLIGGLYALPNLYGEDPSVQISGTRGQQATSETLVQVQGTLSSMNITPKSAVLENGSILVRLEKDEQQLPAKEKI SEVLGDKFSVALNLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKLQYKAVKKG ENFATVIEFADEETANKAIRYIRRVHTALEAASISPTEISFSPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQ GADRIVVELPGVQDTARAKELLGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIIDATS GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINSRLGSQFQITGI DSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTI GLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-119 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 46 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-120 | 46 |
