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Name : clpB (APJL_1103) Accession : YP_001652103.1 Strain : Actinobacillus pleuropneumoniae JL03 Genome accession: NC_010278 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit B Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1221887 - 1224460 bp Length : 2574 bp Strand : + Note : - DNA sequence : ATGAATTTCGAAAAATTTACTACCAAATTGCAAGAAGCCCTTGCAGAAGCACAATCGTTAGCTATCGGAAAAGATAATAA CTATATTGAACCGGCACATTTACTTTATGCGTTAGTCAAACAACCGGACGGCTCTATCGCCCCGCTATTTACTGCACTTA ATGTACAACCGCAACGTATTTTGAGTGAATTAGAGACGATTTTAAACCGCTTACCGACCGTATCCGGCGGTACAACCCAA CCGTCACAACAATTAATTCGCCTGTTAAATCAATGCGATAAACTAGCGCAGCAATTCGGTGACAGCTTTATTTCATCGGA ATTATTCGTGCTTGCCGCACTGGACGATAACGGCGATTTAGGCAAATTATTAAAACAATTTGGCTTGACTAAAGAAAAAG TAAACGCAGCCATCAGCCAAATTCGAGGAGGAGAAAACGTGAATAATCAAAACGCAGAAGAAACCAGACAGGCCCTTCAA AAATATACTATCGATCTCACAGAAAGAGCCAAAGCCGGTAAATTAGATCCGGTCATCGGGCGTGATGAAGAAATCCGCCG TGCAGTACAAGTTTTACAACGCCGTACTAAAAATAACCCGGTATTAATCGGTGAACCTGGGGTCGGTAAAACTGCGATCG TAGAAGGCTTGGCACAACGTATCGTCAACGGCGAAGTGCCGGAAGGTTTAAAAAATAAACGTGTACTTTCTCTCGATATG GGCGCATTAATTGCTGGTGCAAAATATCGCGGCGAATTTGAAGAACGTCTAAAAGCGGTACTTAACGAATTAGCCAAAGA AGAAGGTCAGGTTATCTTATTTATTGATGAAATTCACACCATGGTCGGTGCGGGTAAAACAGACGGCGCAATGGATGCCG GTAACTTACTCAAGCCGTCACTTGCTCGCGGCGAATTACATTGCGTTGGGGCAACTACGTTAGACGAATACCGCCAATAT ATCGAAAAAGATGCGGCACTTGAACGTCGTTTCCAAAAAGTATTAGTGGACGAACCGACCGTTGAGGATACGATTGCAAT TTTACGCGGCTTGAAAGAACGTTATGAAATTCATCACCACGTACAAATTACCGACCCGGCAATTGTCGCGGCGGCAACGC TTTCGCACCGTTATATTTCCGACCGCCAATTACCGGATAAAGCGATCGATTTAATTGATGAAGCCGCATCCAGTTTACGT ATGGAAATCGATTCTAAACCTGAGCCGTTGGATAAACTTGAACGCCGTATTATTCAACTTAAATTGGAACGCCAAGCGTT ACAAAAAGAGGAAGATGAAGCAAGCCGCCAACGTCTTGCAAAATTAGATGAAGAATTGACCGCTCGCGAGCGTGAATATT CCGAATTGGAAGAAGTTTGGAAAGCGGAGAAATCAGCATTACTCGGTACGCAACATATCAAAACTGAGTTAGAAAATGCC CGTATCGAAATGGATCAGGCTCGCCGTGAAAATAATTTCGAGAAAATGTCCGAATTGCAATACGGTAAAATTCCGGCATT GGAAAAACAATTACACGAAGCGGTAAAACGCGAGGAAGAAGGCAGTGAAAATCAACTGCTTCGTACCAAAGTCACCGAGG AGGAAATCGCAGAAGTGCTTTCAAAAGCGACCGGTATTCCGGTTTCCAAAATGATGGAAGGCGAAAAAGAAAAACTATTG CGTATGGAAGAAGTGTTACACAGCCGTGTCATCGGACAAAATGAAGCGGTAGAAGCGGTGGCAAATGCAATTCGCCGTAG CCGTGCCGGATTGTCGGATCCGAATCGTCCGATCGGTTCGTTCTTATTCCTTGGCCCGACCGGGGTCGGTAAGACCGAAC TTTGCAAAACCTTGGCGAATTTCCTATTCGATGATCCTGATGCGATGGTACGTATCGATATGTCGGAATTTATGGAAAAA CACAGCGTTTCTCGTTTAGTCGGCGCACCTCCGGGCTATGTCGGTTATGAAGAAGGCGGTTATTTAACCGAAGCGGTTCG CCGCCGTCCATATTCGGTAGTATTACTCGATGAAGTGGAAAAAGCGCACCCTGACGTGTTTAATATCTTGCTTCAAGTGT TGGATGACGGTCGTTTAACCGATGGTCAAGGTCGTACGGTGGATTTTCGTAATACGGTAGTAATTATGACCTCAAACTTA GGTTCACATTTAATCCAAGAAAATCCGGAATTAGATTATGCTGGAATGAAAGAAGTAGTGATGTCAGTGGTAGGACAACA TTTCCGTCCTGAATTTATCAACCGTATTGATGAAACTGTGGTGTTCCACCCACTTGGTCAAGCACATATCCGTGCGATTG CTCGCATTCAGTTACAACGTTTAATCGCTCGCCTTGCGGAACGCGGTTACGAAGTAACAGTTACCGATGCGGCATTAGAC CATATCGGCAAAGCCGGCTTTGACCCGTTATTCGGTGCAAGACCGCTCAAACGTGCGATTCAGCAAGAGCTTGAAAATCC GCTTGCACAACAGATCTTAAGCGGCAAATTATTACCGAACAGCCCAGTTGTGGTGGACTATCAAAATGACCGATTAAGCA TTAGCAACAGCTAA Protein sequence : MNFEKFTTKLQEALAEAQSLAIGKDNNYIEPAHLLYALVKQPDGSIAPLFTALNVQPQRILSELETILNRLPTVSGGTTQ PSQQLIRLLNQCDKLAQQFGDSFISSELFVLAALDDNGDLGKLLKQFGLTKEKVNAAISQIRGGENVNNQNAEETRQALQ KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDM GALIAGAKYRGEFEERLKAVLNELAKEEGQVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQY IEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLR MEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEELTAREREYSELEEVWKAEKSALLGTQHIKTELENA RIEMDQARRENNFEKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTEEEIAEVLSKATGIPVSKMMEGEKEKLL RMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDPDAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSHLIQENPELDYAGMKEVVMSVVGQHFRPEFINRIDETVVFHPLGQAHIRAIARIQLQRLIARLAERGYEVTVTDAALD HIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNSPVVVDYQNDRLSISNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-110 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001652103.1 | ATP-dependent Clp protease subunit B | VFG2076 | Protein | 2e-111 | 45 |
| clpB | YP_001652103.1 | ATP-dependent Clp protease subunit B | VFG2084 | Protein | 4e-112 | 41 |
