Gene Information

Name : PputGB1_3282 (PputGB1_3282)
Accession : YP_001669510.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3681445 - 3681960 bp
Length : 516 bp
Strand : -
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily

DNA sequence :
ATGTCCATAACGGCCTCTGACGCAGCACCCCACGCGCATCTTCACGCCCTTTACCGTGACCACAACAGCTGGCTGCGCGG
TTGGTTGCGCCATCGGCTGAGCAACTCCGCCGATGCAGCGGACCTTGCCCAGGACACGTTCGTCCGTGTGCTTCTGGCAC
GCTCATCCGGCACCCTGCAGGAACCCCGCAGGTACCTGGCGACCATCGCCCGTGGCCTGGTCATCGACCTGTATCGGCGC
CGCAGCCTGGAGCAGGCCTACCTCGATGCACTGATGGCGCGCCCGGAACTGCACGCGCCTTCGGCCGAGACCCGCGCGCT
GATCCTCGACAGCCTGCTGGCCATCGACCGCATGCTCGATGGCCTGGGTGCGCGTACCCGGCAGATTTTCCTTGCCGTGC
AACTCGATGGGCTCAGCTACGAAAAAGCCGCCGATCGCTGTGGGGTTTCGGTCAGCACGGTGCGCAAGCATCTGGCCAGA
GGCCTGATGCACTGCCTGCTGCTGGAAGAAGCATGA

Protein sequence :
MSITASDAAPHAHLHALYRDHNSWLRGWLRHRLSNSADAADLAQDTFVRVLLARSSGTLQEPRRYLATIARGLVIDLYRR
RSLEQAYLDALMARPELHAPSAETRALILDSLLAIDRMLDGLGARTRQIFLAVQLDGLSYEKAADRCGVSVSTVRKHLAR
GLMHCLLLEEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_3282 YP_001669510.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 6e-36 45