Gene Information

Name : PputGB1_0872 (PputGB1_0872)
Accession : YP_001667118.1
Strain : Pseudomonas putida GB-1
Genome accession: NC_010322
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1003548 - 1004054 bp
Length : 507 bp
Strand : +
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3268 RNA polymerase, sigma-24 subunit, ECF subfamily

DNA sequence : 
GTGATGAACGACGATCTGAGTCAGGTCTATGTCGAGCACAATGGATGGCTCAAGCAATGGCTCTACCGCCGGTTGGGCTG
CTCGGCGCAAGCTGCCGACCTGGCCCAAGATACCTTCCTGCGTATTCTTCAGGCCCAGCAGAAGGCCGGCGCCAAGCTGA
GCCTGCAGCGCCCCCGCGCCTACCTGGCAACGGTGAGCCGGCGGTTGGTCTACGACCATTTCCGCCGTCAGTCACTGGAA
CGCGCCTACCTGGAAATGCTCGAGCAACTTCCCGAGCTGTTCGCGCTGTCCGCCGAAGAGCAGTGGTCCATGCGCGAAAC
CCTGCAGCAACTGGACGCACTGCTCGACACCTTCAAACCGGTGGTGCGCTCGGTGTTCCTGCTGGTGCAGTTGGAGGGCT
TGACCTACATCGAGGTGGCACGCCGCCTGGGCATTGGCGAGCGCACGGTCAAGCGGCACATGGCCAACGCCCTGCAAGCC
TGCATCCTGTTCGAAGAAGACTTCTGA

Protein sequence : 
MMNDDLSQVYVEHNGWLKQWLYRRLGCSAQAADLAQDTFLRILQAQQKAGAKLSLQRPRAYLATVSRRLVYDHFRRQSLE
RAYLEMLEQLPELFALSAEEQWSMRETLQQLDALLDTFKPVVRSVFLLVQLEGLTYIEVARRLGIGERTVKRHMANALQA
CILFEEDF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-32 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputGB1_0872 YP_001667118.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 2e-32 45