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Name : secD (PputGB1_0878) Accession : YP_001667124.1 Strain : Pseudomonas putida GB-1 Genome accession: NC_010322 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1010527 - 1012389 bp Length : 1863 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATATGCACTGATCGTGCTGGTACTGGTGGTCGGTTTCATTTATTCCGCTCCCAA CCTTTACCCGGATGACCCGGCAGTACAGATCAGCGGTGCCAGCTCGGCGCTGCAGGTGAACCAGGCCGACCTCGATCGCG TCAGCAAGGCGCTGGTCGATGCCAAAATCACCGTCAAGGGCGCCAGCCTGGGTGAGAAGGGCAGCGGGCTGATCCGCCTG ACCAATCAGGAAGACCAACTGCCAGCCAAAGATGTCGTGCGCAAGGCACTGGGCGATGATTACGTCGTGGCCCTCAACCT GGCTCAGACTACCCCGCAATGGCTGCGCAACCTGGGTGCAAGCCCGATGAAGCTGGGCCTGGACCTGTCCGGTGGTGTGC ACTTCCTGCTGGAAGTGGACATGGACAAGGCCATGACTGCCCGCATGAAAGTCTACGAAGGCGAGGTCAAGACCTTGCTG CGCAAAGAGCGCATCCGCTACCGCAGCCTGCCTCAGCAGGATGGCGGCATCATGCTGGGCTTCGCTGACGATGCTACCCG CGAACAGGCACGTGTCCTGATCCGCAAGAATTTCAATGATTTCGACCTGACCACCACCGAGCGCAACGAGCTTGCGGTGC TGCGTCTGGCGCTGACCCAGGCGAAAGTCGCCGAGATCCGCGAATACTCGATCAAGCAGAACCTTACCACCGTGCGCAAC CGCGTGAACGAGCTGGGCGTGGCCGAGCCGCTGGTACAGCGCCAGGGCGCCAACCGCATCGTGGTCGAGCTGCCAGGCGT GCAGGACACTGCCGAAGCCAAGCGTATCCTCGGTAAAACCGCCAACCTGGAGTTCCGCTTCGGTGCCGAGCCGGGCGCTT CCAAGGCCACTACCGAAGTGTTCGAGTTCCGTGAAGGCGGCCGTTCCGCCCCGGTCGAGCGCGGCCTGATCATTACCGGT GACCAGGTTACCGACGCCCAGGCCAGCTTTGACGAGCACGGCCGCCCGCAAGTGAACATCCGCCTGGATGGCCACGGTGG CGAGCTGATGAGCCGCGCTACCCGCAGCAACGTCGGTCGCAGCATGGCGGTGATCTTCATCGAGCAGAAGCCGGTCACTC GCTATGTGAAGCAGACCGTCGACGGCGTCGAGAAGGACGTTGCCGTACAAAGCTTCGTGGAAGAGAAGAAAATCATCAGC CTGGCGACCATCCAGTCGCCGCTGGGCAGCCAGTTCCGCATCACCGGCCTGAACGGCCAGGGCGAATCGTCGGAGCTGGC CCTGCTGCTGCGTGCCGGTGGTCTGGCCGCGCCAATGTACTTCGCTGAAGAACGTACCATTGGCCCAAGCCTGGGTGCTG ACAACATCACCAAGGGTATCGATGCGTCGCTGTGGGGCATGTTGTTCGTCTCGCTGTTCATCATCGCCATCTACCGCGGC TTCGGCGTGATCGCCACCATCGCCCTGGCGGGCAACATGGTGCTGCTGCTGGCGCTGATGTCGCTGCTGGGTGCCACCCT GACCCTGCCGGGTATCGCCGGTATCGTGTTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGCGTATTC GCGAAGAGCTCAAAGCCGGCATGTCGGTGCAGCGCGCCATCCACGAAGGTTTCAACCGCGCCTACACCGCGATCATCGAC GCCAACCTGACCAGCCTGCTGGTCGGCGGCATCCTGTTCGCCATGGGGACCGGCCCGGTCAAGGGCTTTGCGGTCACCAT GTCTCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCAATGGTCAACCTGACCTGCGGCGGGCGTG ACATCAAGAAGCTGTGGGTTTGA Protein sequence : MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDAKITVKGASLGEKGSGLIRL TNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLL RKERIRYRSLPQQDGGIMLGFADDATREQARVLIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVRN RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTEVFEFREGGRSAPVERGLIITG DQVTDAQASFDEHGRPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVEEKKIIS LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRG FGVIATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIID ANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLWV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
