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Name : secD (Shal_1556) Accession : YP_001673781.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1876253 - 1878103 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATACCCGATGTGGAAAAACCTAATGGTGATAGTCATTATCGCCATAGGTGGATTCTATGCGATACCAAA CCTTTTCGGAGAAGACCACGCAGTTCAAGTGGTTGCGACTCGAGGAGCAGAGGTCTCAGCGTCGACTCTGTCGACAGTAA ATGAAGTATTAAAGAGCAAAGGTATCGCTGTTAAGCGTTCCGAGCTTGAAAATGGTCAGTTGTTAGTACGCTTAAACAAT GGTGAAGAGCAATTAGTTGCTAAAGAAATCATTAGCGATGCGTTAGGCGACAAGTACACCGTAGCATTGAACTTAGCACC AGCCACACCAGAGTGGTTAGAGGCCATGGGCGGTTCGCCTATGAAGCTAGGTTTGGACTTACGTGGTGGTGTTCACTTCT TGATGGAAGTGGATATGGGCGAAGCGCTTCGAAAGATGAGCGAAGCCAAGGTTGCAGACTTCAGAACTGATTTACGAGCT GAGAAAATTCGCTACGCGGGTATTCGTAATGGCGCCAAAGGCATCGAGATTAAGTTTCGCGATGCCGAGACTTTAACGAA AGCAGAAAACTTTCTTAAGTCTCGCAGCAATGACATGGTCTTCGTTGACAAGACTGTAGGCGATGACTATGTCCTTGTTG CTAATCCAAGTGAAGCTTATTTAAAGCAAGTGAAAGAAGAAGCACTACAGCAAAACATCACCACACTGCGTAACCGTGTA AACGAGTTAGGTGTGGCGGAGCCTGTTGTGCAGCGTCAAGGTGCTGAACGTATTATTGTTGAGCTACCAGGTGTTCAAGA TACTGCGCGCGCAAAAGAGATTTTAAGTGCGACAGCATCGATTGAATTCCACATGGTTGACCAAAAAGCCGATGTTCAAG CTGCGATGAGTGGCCGAGTACCTGCTGGTTCTGAGCTTTATCAGCGCCGCACAGGTGGTCCAGTCGTATTGAAGAAAGCG GTTATGTTGACCGGTGATCATATTCAAGGTGCGCAGCCAAGTTTCGATGAATATAGCCGTCCTCAAGTATCAATTAACCT TGATGCTAAAGGTGGTTCAATCTTCTCTAATGTCACTAAAGATAACATCGGTAACCCGATGGCAACGCTATTTATCGAGT ATAAAGATACCGGTGAAAAGAATGCCGACGGCAGCGTTAAGATGAAGAAGATTGAAGAAGTGATTTCGGTTGCTACCATT CAAGCGCGTCTTGGTCGTAACTTTGTTATCACAGGTCTTGAGCATGCAGAAGCACAGAACCTAGCGTTATTGCTACGTGC TGGTGCGCTAATTGCCCCTGTTTATATTGTTGAAGAACGTACCATTGGTCCAAGCCTAGGTCAGGAAAATATCGAAAACG GTATGCAAGCGATGATCTGGGGTATGGCTGTTGTCTTAATCTTCATGTTGGTTTACTACCGTGGTTTCGGCCTAATCGCA AACCTTGCGCTAACCGCTAACTTAGTGATGGTTGTGGGCGTGATGTCTATGATCCCAGGAGCTGTGCTAACTCTGCCAGG TATTGCCGGTATGGTGTTAACAGTCGGTATGGCGGTTGATGGTAACGTGCTGATTTACGAGCGTATTCGTGAAGAACTGC GTAATGGTCGTAGCGTACAGCAAGCGATTCATGAAGGATACGGTAACGCATTCTCAACTATCGCCGATGCGAACATCACT ACCTTTATGACAGCGCTTATCTTATTTGCTGTGGGTACAGGTGCAGTGAAAGGCTTCGCGGTAACCCTAATGATCGGTAT CGCCACTTCTATGTTTACTTGTATCGTAGGTACTCGTTCAATCGTGAACGCGATCTGGGGTGGTAAACGCGTGAAGAAAC TGTCTATTTAA Protein sequence : MLNKYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQVVATRGAEVSASTLSTVNEVLKSKGIAVKRSELENGQLLVRLNN GEEQLVAKEIISDALGDKYTVALNLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRA EKIRYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSNDMVFVDKTVGDDYVLVANPSEAYLKQVKEEALQQNITTLRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILSATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKA VMLTGDHIQGAQPSFDEYSRPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEVISVATI QARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 9e-124 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-124 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-123 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-123 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-123 | 47 |
