Gene Information

Name : Shal_1616 (Shal_1616)
Accession : YP_001673841.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1942204 - 1942941 bp
Length : 738 bp
Strand : +
Note : KEGG: spc:Sputcn32_2155 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACTAAGAACAGAATAAGTTACAATAGCGAGTTAACAATGAATCAAGAATTATTGCTACAAGTCAGTGGTGTCAGCAA
ACGTTATCAAGAAGGCTCTGTCGATACTGAGGTTTTGCATAATGTTGACTTACAGGTATTTAAAGGTGAGCAACTGGCTA
TCGTCGGTAGCTCAGGTTCGGGTAAGAGTACCTTGCTGCATATTATGGGGACACTTGATAGCCCAACCAGTGGCACGGTC
ACTATGCTTGGGGAAGACTTGTATAAGTTATCGAGTCAGCGTCAAGCCAAGATACGCAATGAAAATTTAGGGTTTATCTA
TCAGTTTCATCATCTATTACCTGAATTTACCGCGCTTGAAAACGTTTCTATGCCAGCGTTAATTCAAGGCCAACGTCGTA
AACAAGTTGAAGCCAAAGCTAAGTCACTGCTCGAGCGCGTGGGGTTAGGGCACAGGCTAAGCCATACTCCGGCAGAGATG
TCTGGTGGTGAGCGTCAACGGGTGGCGATTGCCAGAGCCCTGATTAATGATCCTAAGTTAGTGCTAGCAGATGAGCCCAC
GGGTAACCTCGATGCCAATAGCGGCGAAGCCGTGTATGAGCTGATCACTGAACTTGCCGCGCAGCTGGGCACAGCATTTG
TTGTAGTGACTCACGATCAAAGCTTAGCGGCAAGAATGGATAGGCAGCTGCATATGAAAGATGGCCGCTTGGTGCAAGCC
GAGGAACTTAACGCATGA

Protein sequence : 
MTKNRISYNSELTMNQELLLQVSGVSKRYQEGSVDTEVLHNVDLQVFKGEQLAIVGSSGSGKSTLLHIMGTLDSPTSGTV
TMLGEDLYKLSSQRQAKIRNENLGFIYQFHHLLPEFTALENVSMPALIQGQRRKQVEAKAKSLLERVGLGHRLSHTPAEM
SGGERQRVAIARALINDPKLVLADEPTGNLDANSGEAVYELITELAAQLGTAFVVVTHDQSLAARMDRQLHMKDGRLVQA
EELNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_1616 YP_001673841.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 1e-34 44
Shal_1616 YP_001673841.1 lipoprotein releasing system, ATP-binding protein CP001581.1.gene798.p Protein 3e-35 43
Shal_1616 YP_001673841.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 2e-38 41