Gene Information

Name : Shal_0269 (Shal_0269)
Accession : YP_001672504.1
Strain : Shewanella halifaxensis HAW-EB4
Genome accession: NC_010334
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 322347 - 323030 bp
Length : 684 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_5040 ABC transporter, ATP-binding protein

DNA sequence : 
ATGAGTAACATAGTTTGTAAGCAACTGGTCAAAACATTCCTGCAGGGTGATCAGACAATCTATGGCTTAGATCATGTCTC
ACTCACGATTAAGCAGGGAGAGATGACGGTGTTGTCTGGTCCATCGGGCTCAGGCAAAACCACATTGCTCAATGCGATAG
GCGGCTTAGATGAGCCCGATAGCGGCATTGTCTATGTGGGGGATGTTGAGATCACCGGGCTGACAAAGTCACAGCGCGCC
GATGTACGTTTGCAGCGAATAGGCTTTGTTTTTCAATCCTATAACCTAATTCCTGTTTTAACCGTCCAAGAAAATATCGA
GTTTGTTATGCAGTTGCAGGGGGTATCTGCATCTGAGCGTAAAAAGCGTAGCCAAGAGATCTTGGGCGAAGTGGGGTTAA
CGGGGCTGGAGACGAGAAGACCAGCGCAGCTTTCCGGTGGTCAGCAGCAGCGGGTGGCCGTAGCTCGCGCCATCGCCTCA
AAACCCGTGTTGATCTTAGCCGATGAACCGACCGCCAACTTAGATAGCAAAACATCGGCGCAGTTATTGGAGCTGTTTAC
CCAGCTTAATCGCCAACATGGCATTACTTTTTTAATCGCCACCCATGATGCGCAGGTGTTTGATTATTGTCGGCGTCATA
TCTATATGGTTGACGGTAAAATAGTCACTGATTCAACGAGTTGA

Protein sequence : 
MSNIVCKQLVKTFLQGDQTIYGLDHVSLTIKQGEMTVLSGPSGSGKTTLLNAIGGLDEPDSGIVYVGDVEITGLTKSQRA
DVRLQRIGFVFQSYNLIPVLTVQENIEFVMQLQGVSASERKKRSQEILGEVGLTGLETRRPAQLSGGQQQRVAVARAIAS
KPVLILADEPTANLDSKTSAQLLELFTQLNRQHGITFLIATHDAQVFDYCRRHIYMVDGKIVTDSTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shal_0269 YP_001672504.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-28 44
Shal_0269 YP_001672504.1 ABC transporter-like protein CP001581.1.gene598.p Protein 3e-24 43
Shal_0269 YP_001672504.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-35 43