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Name : Shal_4101 (Shal_4101) Accession : YP_001676300.1 Strain : Shewanella halifaxensis HAW-EB4 Genome accession: NC_010334 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 5002723 - 5004702 bp Length : 1980 bp Strand : - Note : TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF DNA sequence : ATGATCCCAGAATTAGGACACTTTTCGCTGATTATCGGCTTGGCATTCGCCATGCTGTTAGCCATCGTTCCTTTAGTAGG TGTAGCACGTAAAGACCAATACCTAGTGCGCTATGCGTGGCCACTAAGTTACGGAATGTTCTTCTTTATTCTCTTCTCTG TTATCGCGCTTGGCTACAGCTTTGCTGTCGATGACTTCTCTATTGCTTATGTAGCACACCACTCTAATTCTGAGTTACCA ATCTTCTTTAAGATTGCAGCTGTATGGGGTGGCCATGAAGGTTCTTTGCTATTTTGGGTATTCTCATTATCAGCTTGGGC AGCAGCAGTAGCATTGTTTAGTAAAGGCTTGGAAGAAGTCTTTACAGCACGAGTGTTGTCAGTACTGGCGATGATCCTTA TCGGCTTTACGCTGTTTATGTTGTTGACCTCTAGCCCATTTGAGCGATTATTCCCAGTTCCGATGGAAGGGCGTGACCTT AACCCAATGTTGCAAGATGTTGGTTTGATTTTCCACCCACCAATGCTTTATCTTGGTTATGTAGGTTTTGCTGTAAGCTT CGCTTTTGCAATTGCAGCCTTGATGAGCGGCAGCCTTGACTCAGCTTGGGCTCGTTGGAGCCGTCCTTGGACCTTAGCAG CATGGGTATTCCTAACTGGCGGTATCTCACTCGGTTCTTGGTGGGCATACTACGAACTCGGTTGGGGTGGTTGGTGGTTC TGGGATCCAGTTGAGAACGCCTCTTTCATGCCTTGGTTAATTGGTACAGCGCTACTTCACTCGGTGATCGTAACGGAGAA GCGTGGCGCATTCCGTAACTGGACTGTTTTGCTTTCGATCTTTGCCTTCTCGCTAAGCTTACTTGGTACCTTTATTGTTC GTTCTGGCGTGTTAACTTCGGTTCACTCGTTTGCAGCGGATCCAAGTCGAGGTATGTTCATCCTATTGCTACTTGGTTTA GCCGTGGGTGGTTCACTCACTCTATTTGCTTTCAGAGCAAGTGAGATGCGTAGCCCTGCTCGATTTGAGTTGAAATCTAA AGAAACCATGATACTGATATGTAACCTACTGCTAACGGTTGCTTGTGGTACAGTATTGCTCGGTACCCTATATCCACTAC TAATCGACGCATTAGGCATGGGTAAGATTTCTGTAGGACCTCCATACTTTAACGCGGTATTCGTTCCAATCGTTCTAGTT CTATTTGGCTTTATGGGTGTAGGCCCGGTTATTCGCTGGAAGAAGTCTAAAGCGGGTGAACTTAAGCGTCAGCTAATCGT CCCCGCAGTGATCTCTGCGGTAGTTGGCTTAGCTGCGCCTTTCCTAGCCGATGGTCAATTTAACATTTGGGTTGTATTCG GTATTGGTATGGCTGTATGGGTCGCCTTGATGACATTCCGCGCCGCATACAACATGGTTAAAACTAAGGATGGTTCTATT GATTTAACCCGTCTTGGCCGCAGTCAACTGGGTATGATTATCGCTCACCTTGGTATTGCCGTATCAGTTGTTGGTGCCAC TATGGTATCTAACTACTCGTTAGAGAAGAGTGTTCGTATGGGTCCTGGTATTTCTCAGGAACTGGCGGGTTACACCTTTA ATTATGTGGAAACCAAGAATGTTGTTGGTCCTAACTACACGGCTCAACAAGGTCAAATCGAAGTCTATGAGGGTGATGAT TACGTTACTCTACTAAGACCTGATCGTCGTCAATACAATGTTCGTACTATGGACATGACTGAAGCCGGTATTGATTGGGG TCTATTCCGAGATCTTTACGTGACAATGGGTGACCCAATTAGTCGTACAGAATACGCAGTGCGTATCAACTATAAGCCTT ATGTTCGCTGGATCTGGTTTGGCTCTATCTTTATGATGGTCGGTGGTTTCTTCGCCGCATCTGATAAGCGCTACCGCGTA AGAGCTAAGAGCGCAGAAAAGACTGCAGCTAAAGAAGCTGACAAGTTAGCAACGGCTTAA Protein sequence : MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSIAYVAHHSNSELP IFFKIAAVWGGHEGSLLFWVFSLSAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPVPMEGRDL NPMLQDVGLIFHPPMLYLGYVGFAVSFAFAIAALMSGSLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF WDPVENASFMPWLIGTALLHSVIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL AVGGSLTLFAFRASEMRSPARFELKSKETMILICNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV LFGFMGVGPVIRWKKSKAGELKRQLIVPAVISAVVGLAAPFLADGQFNIWVVFGIGMAVWVALMTFRAAYNMVKTKDGSI DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISQELAGYTFNYVETKNVVGPNYTAQQGQIEVYEGDD YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPYVRWIWFGSIFMMVGGFFAASDKRYRV RAKSAEKTAAKEADKLATA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 5e-149 | 53 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 2e-125 | 50 |
