Gene Information

Name : EcolC_1220 (EcolC_1220)
Accession : YP_001724213.1
Strain : Escherichia coli ATCC 8739
Genome accession: NC_010468
Putative virulence/resistance : Virulence
Product : microcompartments protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1340247 - 1340582 bp
Length : 336 bp
Strand : +
Note : PFAM: microcompartments protein; KEGG: sbo:SBO_2472 detox protein

DNA sequence : 
ATGAACGGTCCCGTTCTGGACCCTGATAAAGAGGAAAGCACAATGGAAGCATTAGGAATGATCGAAACCCGGGGCCTGGT
TGCACTGATTGAGGCTTCTGACGCGATGGTGAAAGCTGCGCGCGTCAAGCTGGTTGGTGTTAAGCAGATTGGCGGCGGCC
TGTGTACTGCCATGGTTCGTGGTGATGTTGCAGCCTGTAAAGCCGCGACCGATGCAGGTGCCGCAGCGGCACAGCGTATC
GGCGAGCTGGTATCTGTACACGTTATCCCGCGTCCGCACGGCGACCTGGAAGAAGTCTTCCCGATCGGCCTGAAAGGCGA
TAGCAGCAACCTGTAA

Protein sequence : 
MNGPVLDPDKEESTMEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRI
GELVSVHVIPRPHGDLEEVFPIGLKGDSSNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 2e-14 62
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 4e-14 61
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 1e-12 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcolC_1220 YP_001724213.1 microcompartments protein VFG1596 Protein 6e-15 62
EcolC_1220 YP_001724213.1 microcompartments protein VFG1597 Protein 2e-14 61
EcolC_1220 YP_001724213.1 microcompartments protein VFG1598 Protein 5e-13 56