Gene Information

Name : PputW619_1828 (PputW619_1828)
Accession : YP_001748701.1
Strain : Pseudomonas putida W619
Genome accession: NC_010501
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2044149 - 2044658 bp
Length : 510 bp
Strand : -
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA2468 probable sigma-70 factor, ECF subfamily

DNA sequence : 
ATGGCAGTGCATGAAACGGATGCGATCATTCCGCTTGAGGTCCTGTATGACGCCCAGCGCGGCTGGCTGCACAGCTGGCT
GAAGCGTTCCCTGGGCTGCTCGCAGCAGGCCGCAGACCTGGCCCAGGACACGTTCGTACGCCTGTTGGTGCGCAACCAGC
CGATCAGTACCCAGGCGCCCCGCGCTCTGCTGGTACGCATCGCCCGCGGCCTTGTGGTCGACCATTGGCGGCGCGACGCA
CTGCAGCGCGCCTACCTGCAAACCTTGGCGCAGTTGCCCGAGGCCAGCTACCCCTCCCCGCACGTGCGCCACGAGGCCAT
GCAGTGCCTCGAGCGCATCGCGCAAATGCTCGATGGCCTCAAACCCACCGTGCGCGACGCCTTCCTGCTATACCAGCTGG
GTGGCCTGACCCATGCGCAAATAGCCGAACGGCTAGGGGTTTCCAGCCGCACGGTAGAGCGCCACGTGGCCAACGCGCTG
CTGCACTGCTACCGGCTGTGCTTCGAGTGA

Protein sequence : 
MAVHETDAIIPLEVLYDAQRGWLHSWLKRSLGCSQQAADLAQDTFVRLLVRNQPISTQAPRALLVRIARGLVVDHWRRDA
LQRAYLQTLAQLPEASYPSPHVRHEAMQCLERIAQMLDGLKPTVRDAFLLYQLGGLTHAQIAERLGVSSRTVERHVANAL
LHCYRLCFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-33 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputW619_1828 YP_001748701.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 1e-33 45