Gene Information

Name : PputW619_4479 (PputW619_4479)
Accession : YP_001751328.1
Strain : Pseudomonas putida W619
Genome accession: NC_010501
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4943375 - 4943890 bp
Length : 516 bp
Strand : +
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily

DNA sequence : 
ATGCAGCTCAACGACACGCTCAAACCGGCCGAAGTCGCCCTGCTCTATCAGTCCCATCACGCTTGGCTACGTGGCTGGCT
GCGCAGCCGGGTCGGCTGCCAGGAACACGCCGCAGACCTTGCGCAGGACACCTTCGTGCGCCTGCTGCGCGCGCGCCAGG
TTTCGCCGATCAAAGAACCGCGGGCTTACCTGAGCAGCATCGCACGCGGCCTGATGATCGACCAGTTCCGCCGTCGCGCC
CTGGAGCGCGCCTACCAGGAAAGCCTCGCCCATGTACCCGCAGGCGAAGTACCCAGCGAAGAGCATCGCCTGGTGATTCT
GGATGCCCTCGAGCGCCTTGACCGCGCCCTGCACCAGCTCAGGCCCCGCGCCCGTCAGGCCTTTTTGCTGGCCCAGCTCG
ATGGCCTGAGCATCGCGCAGATCGCCCTTCGCCTTGGCGTTTCGCGTGCCACCGTCGAACGCGACCTGGCCAAGGCTCTG
GGCGTCTGCTACCGGTTGCGCTATGCCGAGCTCTGA

Protein sequence : 
MQLNDTLKPAEVALLYQSHHAWLRGWLRSRVGCQEHAADLAQDTFVRLLRARQVSPIKEPRAYLSSIARGLMIDQFRRRA
LERAYQESLAHVPAGEVPSEEHRLVILDALERLDRALHQLRPRARQAFLLAQLDGLSIAQIALRLGVSRATVERDLAKAL
GVCYRLRYAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 9e-34 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputW619_4479 YP_001751328.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 4e-34 46