|
Name : secD (Swoo_1758) Accession : YP_001760137.1 Strain : Shewanella woodyi ATCC 51908 Genome accession: NC_010506 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2182926 - 2184776 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAATAAATATCCAATGTGGAAGAACCTGATGGTGATGATTATCATCGCAGTAGGTTCTTTCTATGCGATTCCAAA TCTCTTCGGGGAAGACTACGCTGTACAGGTTGTCGCTACCCGTGGTGCTGAGGTTACTGCAACGACTCAGTCGACCGTAA ACGATATTCTTGCAAGCAAAAATATCGAGGTAAAACGTTCTGAACTTGAAAATGGACAATTGCTTGTTCGTGTCAATAAC GGCGAGCAACAACTGTTAGCAAAAGAAGCGATTATCGAGTCTCTAGGTGATAAATACATCGTCGCCTTAAACTTAGCTCC AAAGACGCCACAGTGGCTAGAATCAATGGGCGGAAGTCCAATGAAGTTAGGTCTGGATCTACGTGGTGGTGTGCACTTCT TAATGGAAGTGGATATGGGCGAAGCGATCCGTAAGATGACTGAAGCCAAGATGTCAGATTTTAGAACCGATCTTCGTGGT GAAAAAATCCGATATGCAGGTATTCGAAATAGCGCTAAAGGTATCGAGATTAAGTTCCGTGATGAGGAAAACTTAGGCAG AGCTGAACGTTTTCTAAAGACTCGCGGTAATGACATGGTCTTTAGAGATATCTCATCTGGCGGTAATTACCTGTTACTGG CAAATCTTAGCGAAGCTTATGTTAAGCAAGTGAAAGAGGAAGCACTGCAGCAAAACATCACCACGATCCGTAATCGTGTG AATGAGCTAGGTGTAGCCGAGCCTGTTGTACAGCGTCAAGGTGCTGAGCGTATTATCGTTGAACTTCCAGGTGTTCAAGA CACGGCTCGTGCTAAAGATATCTTAGGTGCAACTGCGTCAATTGAGTTCCACATGGTTGACGAGAAAGCCGATGCAGCTG CCGCTGCAAGTGGCCGCATCTCACCAAGTTCGCAGGTGTATAACCGCCGTAATGGTGGCCAAGTTGTGCTGCATAAAGCG GTTATGTTGACCGGTGATCATATTCAGGGCGCACAGCCAAGTTTCGATGAATACAGCCGTCCTCAGGTAAGTATTAACTT AGATTCTAAAGGCGGTTCTATCTTCTCAAATGTGACTAAGGACAACATTGGTAAACCAATGGCGACCCTGTTTATTGAGT ATAAAGATAACGGCGAAAAGAATCCTGACGGCAGCATCAAGATGCAGAAGATTGAAGAGGTGATCTCAGTTGCCACTATT CAAGCACGTCTTGGTCGTAACTTTGTTATCACAGGTCTTGAGCATGCAGAAGCGCAAAGCTTAGCTCTACTACTTCGTGC TGGTGCCTTGATTGCGCCTGTGACAATCGTAGAAGAGCGCACCATTGGCCCAAGCCTAGGTGCTGAAAATATTCAAAACG GTATGCAAGCGATGATCTGGGGCATGGCCGTAGTACTCATCTTTATGTTGGTGTACTACCGTGGTTTTGGTCTTATTGCG AACTTAGCTCTAACGGCTAACTTGGTGATGGTTGTTGGCGTTATGTCGATGATCCCAGGTGCCGTGCTGACCCTACCAGG TATTGCGGGTATGGTGCTAACCGTGGGTATGGCTGTAGATGGTAACGTTCTAATTTATGAGCGTATCCGTGAAGAGCTAC GTAACGGCCGCAGTGTGCAACAAGCGATCCATGAAGGTTATGGCAACGCGTTTTCAACCATCGCCGATGCGAACATCACC ACCTTTATGACGGCATTGATTCTGTTTGCCGTGGGTACTGGTGCTGTTAAAGGTTTTGCTGTCACCTTGATGATTGGTAT TGCGACGTCAATGTTCACTTCTATCGTGGGTACTCGCTCAATAGTTAACGCTATTTGGGGTGGTAAACGCGTTAAGAAAC TATCTATATAA Protein sequence : MLNKYPMWKNLMVMIIIAVGSFYAIPNLFGEDYAVQVVATRGAEVTATTQSTVNDILASKNIEVKRSELENGQLLVRVNN GEQQLLAKEAIIESLGDKYIVALNLAPKTPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKMSDFRTDLRG EKIRYAGIRNSAKGIEIKFRDEENLGRAERFLKTRGNDMVFRDISSGGNYLLLANLSEAYVKQVKEEALQQNITTIRNRV NELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAAASGRISPSSQVYNRRNGGQVVLHKA VMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGEKNPDGSIKMQKIEEVISVATI QARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGMQAMIWGMAVVLIFMLVYYRGFGLIA NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANIT TFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 47 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-122 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-122 | 47 |
