Gene Information

Name : Swoo_1899 (Swoo_1899)
Accession : YP_001760278.1
Strain : Shewanella woodyi ATCC 51908
Genome accession: NC_010506
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2338995 - 2339681 bp
Length : 687 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2740 putative macrolide efflux ABC transporter, ATP-binding protein

DNA sequence : 
ATGATCAAAGTCAATGGATTAACTAAAGAGTACCAGATGGGCAATACCTCTGTGTTTGCACTAAGAGGGGTAGAGTTTAC
GATTAATCACAATGAGTTTGTTGCCATCATGGGACCATCAGGTTCTGGTAAATCGACATTGATGAATATCATAGGGTGTT
TAGATAAACCTACTAGTGGTAGCTATCAGTTAAACGAGCAAGAAGTTGCTAGTTTAGATGATGATGCATTATCAGCGGTT
CGCAACAAAGAGATAGGTTTCGTCTTTCAAAGTTTCCATCTATTACCGCGAATGAGTGCATTGCAAAATGTGTTGTTGCC
ATTACGTTTCTCTAACCCTCCAAATCAAGATAGCCAATATGCGAGTGAGTTATTAACTCGGGTGGGTCTAGGGACAAGGC
AAGATCATAGACCAAATCAACTGTCGGGTGGTCAGAGACAAAGGGTTGCTATCGCTCGAGCTCTGGTTAATCGTCCAGCC
ATTTTACTCGCTGATGAGCCAACTGGTGCCTTAGACAGTAAAACATCTGTTGAGATCATGGATCTGTTTACCGACCTGCA
CAAAGCGGGACAGACGATTATTCTTGTCACCCATGAAGAGGAAGTTGCTGCTTATGCACAGCGAGTGATTCGCATGCGGG
ACGGTCATATTGTAGAGATTGAAGACCGGAGCACCTATGCCGCTTGA

Protein sequence : 
MIKVNGLTKEYQMGNTSVFALRGVEFTINHNEFVAIMGPSGSGKSTLMNIIGCLDKPTSGSYQLNEQEVASLDDDALSAV
RNKEIGFVFQSFHLLPRMSALQNVLLPLRFSNPPNQDSQYASELLTRVGLGTRQDHRPNQLSGGQRQRVAIARALVNRPA
ILLADEPTGALDSKTSVEIMDLFTDLHKAGQTIILVTHEEEVAAYAQRVIRMRDGHIVEIEDRSTYAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swoo_1899 YP_001760278.1 ABC transporter-like protein NC_012469.1.7686878. Protein 9e-56 56
Swoo_1899 YP_001760278.1 ABC transporter-like protein NC_008702.1.4606598. Protein 5e-46 49
Swoo_1899 YP_001760278.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-44 44
Swoo_1899 YP_001760278.1 ABC transporter-like protein CP001581.1.gene598.p Protein 9e-43 43