|
Name : secD (Xfasm12_0193) Accession : YP_001774856.1 Strain : Xylella fastidiosa M12 Genome accession: NC_010513 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 230552 - 232396 bp Length : 1845 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTTGAATTACCCCGTTGGAAATATGTTCTTATTTTTGTTGTGCTTGTGTTGAGCACGCTGTACGCGTTACCAAACGT GTATCAAAAAGATCCTTCCGTGCAGATTACCGCCAATCGAGGCGGCCATATTGACGATGCATTCCGCCAGCAGGTGATGA GTGATCTGCAAGCATCCGGCATTGTGCCCAAGGCGGTGACCAAGGACGGGGAGAGCCTTATGGTGCGCTTGATGTCGTTG GAGATGCAGACCCGTGCAAGCGATGTGTTGCGGGCTAAAGTCGGTGAGAATTACACCGTTGCATTGAATCTCGCTTCCAC TGTGCCAGATTGGTTGGCTAAGTTGGGTGGGCGACCAATGGTGTTAGGTTTGGATCTGGTTGGTGGCGTGCATTTCGCGC TTCAGGTGGATCAGAAGGCCGCTCTGAATAAACGTATGGATGCTTTTGTTGAGGAGGTACGTTCGACGTTGGGTAGCAAC CGTATTGGCTTCCGCATGGTCGAACGCCGTCCGGACAACACGATTCGAGTGACGTTTGATGATGATGCTCATCTCAATGA AGCACGTATGGTGTTGTTTAAGGAGCAAGTGGGGCTGAGTTATTCGGTATCCGGAAATACCTTGATTGCTCGTGTTTCTG AGAATGAGTTGCGTCAGATTGCCAGTGGTGCAGTTGAGCAAAATCTGACGACTCTGCGTAATCGCATCAATGAATTAGGC GTGGCCGAACCAATTATCCAACGCCAGGGGGATGATCGTATTGTTGTTGAGTTGCCTGGTGTTCAGGATACTGCTGAGGC TAAACGTCTGATAGGTGCGACTGCTACGCTGGAGTTTCGGGGTGTGGTCGACGGGGATGCCTATGAGGCAGTCCGTACTG GGAATGTTCCTCCTGAGGCCAGGGTGTATTACATACGCGGCACCAACCAGCCAGTTTTATTGAATAAGCGTGTGATTGTT TCTGGTGATGAGATGGTGAATGCCACTGTCGGTGTGGATGAGAACGGCATGCCAGCGGTCAATGTCACTCTCAGTAATGT TGCTGGCCAGCGTATGTTGGACTACACCCAGCGCAACCTTTACAAGCTGATGTCTGTGGTCTACATCGAGCGTATTCCGA CTGTGAGCATGGTTGATGGTAAGGAAGTGCGTGGCGTGCGGTTGAAGGAAGAGGCATTGTCCCCAACCCGGATTGCTGGG GTATTTGGAAAAAACTTCCGTACCACCGGGTTGGAGAAGACTGAGGCTGAAAATCTGTCTAAATTGTTGCGCGCTGGTTC GTTGGCTGCACCGATGGATTTCGTTGAGGAATATGTGATCGGTCCTAGTCTGGGTGCAGAGAATGTAGAACGTGGTGTGA CTGCAGTGGTGTTTTCTTTCCTATTCACCCTGGTGTTTTTCACCATCTATTACCGCATGTTTGGTGTGATTACTTCATTG GCATTGCTGTTTAATCTGTTGATTGTGGTAGCGGTGATGTCGCTGTTTGGTGCAACCATGACTTTGCCGGGTTTTGCCGG GTTGGCGCTGTCGGTCGGGCTTTCGGTGGATGCTAACGTGTTGATCAACGAGCGTATCCGTGAGGAGTTGCGTCACGGGA TGCCTCCGAGATCGGCGATTGTGGCCGGTTACGACAAGGCGGGTAGCACGATTCTTGATGCCAATTTGACCGGACTGATT GTTGGTGTTGCCTTGTATGCTTTCGGAACCGGTCCTTTGAAGGGCTTTGCGTTGACTATGATTATCGGGATTTTCGCCTC AATGTTTACTGCGATTACTGTATCGCGTTCGCTCTCTGCGCTGATTTACGGTACGCGCAACAATCTCAAGTCTTTGGCTA TCTGA Protein sequence : MLELPRWKYVLIFVVLVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMSDLQASGIVPKAVTKDGESLMVRLMSL EMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSN RIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIV SGDEMVNATVGVDENGMPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAG VFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLI VGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSLAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-102 | 44 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-102 | 44 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-102 | 44 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-102 | 44 |
