Gene Information

Name : HSM_0723 (HSM_0723)
Accession : YP_001784061.1
Strain : Haemophilus somnus 2336
Genome accession: NC_010519
Putative virulence/resistance : Unknown
Product : cytochrome C biogenesis protein CcmF
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG1138
EC number : -
Position : 831152 - 833101 bp
Length : 1950 bp
Strand : +
Note : TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; KEGG: hso:HS_0398 cytochrome C biogenesis protein F

DNA sequence :
ATGATCGCTGAATTAGGCAATTATGCTCTGGCTTTAAGTTTAGCTATTTCTGTTTTATTATCTATTTTTCCATTATGGGG
AGCGGAAAAAGGCAATGTACAGATGATGGCTTTAGCTCGCCCAATGACCTATGGTTTATTTGTTAGCTTAACTGTTTCTT
TTGTTGCACTTTTCTATTTATTTCTGACAAATGATTTTTCAGTACAATATGTGGTGAACAATTCAAATACCAACTTACCT
TTGCAATATCGTCTATCCGCTGTTTGGGGCTCCCACGAAGGTTCTTTATTACTTTGGATTTGGCTATTGACTCTTTGGAG
TGCGGCTGTGGCTTTTTTGAGTAAACAATTACCCCAAGAAGCTGTGGCTCGTGTCTTGGCAATTATGGGTATTATTACGA
TTGGTTTCTTACTATTTGTGATGTTTACTTCTAACCCTTTTGACCGCACTTTCCCTGATTTTCCTGTTGAGGGAAGAGAA
TTAAATCCATTATTACAAGATATTGGTCTGATTTTTCATCCGCCTTTACTTTACATGGGCTATGTGGGTTTTTCCGTTGC
TTTTGCTTTTGCTATTGCATCATTGATGACGGGAAAACTGGATACCGCATGGGCAAGATGGTCCCGACCTTGGACAATGG
CTGCTTGGGTATTTCTAACATTGGGGATTGTGCTGGGATCTTGGTGGGCATATTACGAACTTGGCTGGGGCGGTTGGTGG
TTCTGGGATCCTGTAGAAAACGCCTCTTTAATGCCTTGGCTTGCCGGTACTGCATTGCTTCATTCTCTTGCGGTAACGGA
AAAACGTGGTTCATTTAAAGCATGGACAGTATTGCTGGCAATCTTGGCTTTTTCACTGTGTTTATTAGGTACTTTTTTGG
TTCGTTCTGGTATTTTGGTTTCGGTGCATGCTTTTGCCTCTGACCCAACTAGAGGTTTATATATTTTAGCTTATTTAATT
GTAGTTATTGGCGGTTCGCTAGCGTTATACGCTTATAAAGGCAATCTTATTCGCACAAGAAACAATGCTGAACGTTATTC
TCGAGAAACTATGTTGTTAATCAATAATATTTTATTAATGACCGCACTTAGTGTGGTGTTCTTGGGTACTCTCCTGCCTT
TAGTACACAAACAATTAGGGTTGGGAACTATTTCTATCGGCTCTCCATTTTTTGATCAAATGTTTTTATTGATCATGATC
CCTTTATCACTTTTATTGGGTGTCGGACCTTTAGTAAAGTGGCGTCGAGACCAATTCTGTGCTATTCGTCTTCCGGTTAT
CATCAGTTTAGTCATTATGCTTATTACCGGATTTGTTTTACCTTATTTTTTACAAGATCGTATTACAGTGAGTGCCGTTC
TTGGTGTCATGATGGCAATGTTTATTCTTCTTCTAGCACTCTATGAATTGCAGCAAAGAGCAACGCATAAGCATAGCTTT
TGGATTGGCATAACAAAATTGTCTCGTTCTCATTGGGGAATGGTTTTAGCACATTTAGGGGTTGCGATGACGATATGGGG
AATTGCTTTTAGCCAAAATTACAGTATTGAAAGAGACGTTCGAATGAATGTGGGGGATACAGTAAAAATTGCAGATTATG
AATTTACTTTCCAAGGTATATCCGATGTCAATGGTGTCAATTACTTAGGCGGAAAGGCACAAATTGACATCAGTCGAAAC
GGTAAGTTTGAAACCACGTTGTTTGCTGAAAAACGTTTCTATACAGTGAGTAAAATGACAATGACTGAAGCGGCTATTGA
TTGGGGGTTATCTCGAGATCTATATGTTGCACTGGGCGAAAGTTTAAATGATGGTTCATGGGCTTTACGCTTGTATTATA
AACCTTTTATTCGTTGGATTTGGCTGGGAGGTATATTTATGGCATTCGGCGGATTACTCTGTATATTTGACCGACGTTAT
CGTTTTGGAAAACTTCTAAAACAAGGATAA

Protein sequence :
MIAELGNYALALSLAISVLLSIFPLWGAEKGNVQMMALARPMTYGLFVSLTVSFVALFYLFLTNDFSVQYVVNNSNTNLP
LQYRLSAVWGSHEGSLLLWIWLLTLWSAAVAFLSKQLPQEAVARVLAIMGIITIGFLLFVMFTSNPFDRTFPDFPVEGRE
LNPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIASLMTGKLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWLAGTALLHSLAVTEKRGSFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLI
VVIGGSLALYAYKGNLIRTRNNAERYSRETMLLINNILLMTALSVVFLGTLLPLVHKQLGLGTISIGSPFFDQMFLLIMI
PLSLLLGVGPLVKWRRDQFCAIRLPVIISLVIMLITGFVLPYFLQDRITVSAVLGVMMAMFILLLALYELQQRATHKHSF
WIGITKLSRSHWGMVLAHLGVAMTIWGIAFSQNYSIERDVRMNVGDTVKIADYEFTFQGISDVNGVNYLGGKAQIDISRN
GKFETTLFAEKRFYTVSKMTMTEAAIDWGLSRDLYVALGESLNDGSWALRLYYKPFIRWIWLGGIFMAFGGLLCIFDRRY
RFGKLLKQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ccmF YP_217241.1 cytochrome c-type biogenesis protein Not tested SPI-12 Protein 9e-153 63
ccmF AAN62106.1 putative cytochrome C-type biogenesis protein CcmF Not tested PAGI-2(C) Protein 5e-132 53