Gene Information

Name : Lcho_1093 (Lcho_1093)
Accession : YP_001790127.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : cold-shock DNA-binding domain-containing protein
Function : -
COG functional category : K : Transcription
COG ID : COG1278
EC number : -
Position : 1166555 - 1166773 bp
Length : 219 bp
Strand : -
Note : PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: azo:azo2121 cold shock-like protein

DNA sequence :
ATGAGTACTCCCACCCAGACTGGCATCGTGAAGTGGTTTGACGACGGCAAGGGCTTCGGCTTCATCACGCCGGAAGACGG
CGGCAAGGACCTGTTCGCTCACCACAGCGAAATCCGCAACGGTGGCGGTTTCCGCAGCCTGCAGGAAAACCAGCGCGTCG
AGTTCGAAACGAAGCAAGGCCCCAAGGGTCTGCAAGCAGCGAACATCCGCCCGCTGTGA

Protein sequence :
MSTPTQTGIVKWFDDGKGFGFITPEDGGKDLFAHHSEIRNGGGFRSLQENQRVEFETKQGPKGLQAANIRPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18076.1 unknown Not tested TTSS locus Protein 9e-13 48
cspH YP_216241.1 cold shock protein-like protein Not tested SPI-11 Protein 0.022 45