Gene Information

Name : Lcho_1546 (Lcho_1546)
Accession : YP_001790579.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Virulence
Product : heme exporter protein CcmC
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0755
EC number : -
Position : 1641673 - 1642416 bp
Length : 744 bp
Strand : +
Note : TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: mpt:Mpe_A1213 ABC transporter, permease domain protein

DNA sequence : 
ATGAAGAAACTGCACCTTTTCCATTTCTCAGCGCCATCGCGCTTCTATGCGCTCACCGGCGCCCTGCTGCCCTGGCTGTG
GACCGCCGCGGCGCTGCTGGCGGCCGCCGGCCTGTACATCGGTTTCGTGATCGCCCCGACCGACGCCACCCAGGGCGAGG
TCTATCGCGTCATCTTCATCCACGTGCCGACCGCCTGGGTGTCGATGGTGCTGTACCTGGCGATGGCGTTCTGGGCTGCG
ATCGGCTGGGCCTTCAACGCGCGCATGGGCTCGATGCTCGCGCGTGCCATCGCCCCGACCGGCGCGCTGTTCACCTTCAT
GGCGCTGTGGACCGGCGCCCTGTGGGGCAAGCCGACCTGGGGCACCTGGTGGGTCTGGGACGCGCGGCTGACGTCCGAGT
TCATCCTGCTGCTGCTCTACCTCGGCTACATGGCGCTGGTGGCGGCGATCGACGACACCCGCCGTGCCGACCGGGCCGGT
GCACTGCTGGCGGTGGTGGGCGCGGTCAACGTGCCGATCATCTATTTCTCGGTGAAGTGGTGGAACACCCTGCACCAGGG
CGCGTCGGTCAGCCTGACCGCCGCACCCAAGATGGCCGAGACCATGCTCAACGCGATGCTGCTGATGAGCCTGGCCTGCT
GGGCCTACGCGTTCGCGATGGTCTTCATGCGCACCCGGGCCATCATCCTCGAGCGCGAGCGCGAGACCGCCTGGGTGGGC
GAACTGGCCGGGAGGCCGACATGA

Protein sequence : 
MKKLHLFHFSAPSRFYALTGALLPWLWTAAALLAAAGLYIGFVIAPTDATQGEVYRVIFIHVPTAWVSMVLYLAMAFWAA
IGWAFNARMGSMLARAIAPTGALFTFMALWTGALWGKPTWGTWWVWDARLTSEFILLLLYLGYMALVAAIDDTRRADRAG
ALLAVVGAVNVPIIYFSVKWWNTLHQGASVSLTAAPKMAETMLNAMLLMSLACWAYAFAMVFMRTRAIILERERETAWVG
ELAGRPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ccmC AAN62109.1 putative heme exporter protein C Not tested PAGI-2(C) Protein 2e-48 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_1546 YP_001790579.1 heme exporter protein CcmC VFG1856 Protein 1e-27 48